View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11233_low_6 (Length: 479)

Name: NF11233_low_6
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11233_low_6
NF11233_low_6
[»] chr2 (2 HSPs)
chr2 (18-479)||(3489568-3490027)
chr2 (23-71)||(3507177-3507225)


Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 3490027 - 3489568
Alignment:
Q  18 gacactgaaattgact-aggaaaaactaaaactccgtgttattcatattggaaatcaccagtcatgctcaacattgaagaacaaatatatacacaacaac 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3490027 gacactgaaattgacttaggaaaaactaaaactccgtgttattcatattggaaatcaccagtcatgctcaacattgaagaacaaatatatacacaacaac 3489928  T
Q  117 aaaaccaaacgacaaaaactaaatatcccagaagggctaataagttgctcttggcaaacaaaatacaaaagaaacttagattattattatgatgatgata 216  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  3489927 gaaaccaaacgacaaaaactaaatatcccaaaagggctaataagttgctcttggcaaacaaaatacaaaagaaacttagattattattatgatgat---a 3489831  T
Q  217 aaattagtctagcttccccaagtagcccagttagcttcacttccgacacgtggcatcatttgattccttgactgagaatcaacattgaaattggccccac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3489830 aaattagtctagcttccccaagtagcccagttagcttcacttccgacacgtggcatcatttgattccttgactgagaatcaacattgaaattggccccac 3489731  T
Q  317 acataacaccctcactgtcaatcctaggcattgctttcatcttcttggttggatgttcaaagttcaacagaccatgctcactatgaaacagacaccctga 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3489730 acataacaccctcactgtcaatcctaggcattgctttcatcttcttggttggatgttcaaagttcaacagaccatgctcactatgaaacagacaccctga 3489631  T
Q  417 aatttatgcattaaattctattagtccgtagacaatttttcacattatctaagtaatagtacc 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3489630 aatttatgcattaaattctattagtccgtagacaatttttcacattatctaagtaatagtacc 3489568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 3507225 - 3507177
Alignment:
Q  23 tgaaattgactaggaaaaactaaaactccgtgttattcatattggaaat 71  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||||||    
T  3507225 tgaaattgattaggcaaaactaaaacttcgtgttattcatattggaaat 3507177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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