View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11234_high_1 (Length: 567)
Name: NF11234_high_1
Description: NF11234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11234_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 96 - 550
Target Start/End: Original strand, 11161113 - 11161567
Alignment:
| Q |
96 |
ctagtcatgttggccagtacattttagcctaaaaaatctagccttgttcgattatttatgcggataatacgtgaatcttcatgttgttgtatgcatgtgg |
195 |
Q |
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| T |
11161113 |
ctagtcatgttggccagtacattttagcctaaaaaatctagccttgttcgactatttatgcggataatacatgaatcttcatgttgttgtatgtatgtgg |
11161212 |
T |
|
| Q |
196 |
cactctaggtctagcatgttttccccatctcgcgtcgnnnnnnnnnnnnccttatcaatgcatgctacattgcttcaaaatgtgccattgtgaacatagt |
295 |
Q |
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| T |
11161213 |
cactctaggtctagcctgttttccccatcttgcgtcgttttctatttttccttatcaatgcatgctacattgcttcaaaatgtgccattgtgaacatagt |
11161312 |
T |
|
| Q |
296 |
tccttcagttagcgacattataaaaatgggccacgagcaaaacatagaattgacaagttccacatgcctttcattgcttctaacactcccacgacctgcg |
395 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11161313 |
tccttcagttagcgacattataaacatggggcacgagcaaaacatagaattgacaagttccacatgtctttcattgcttctaacactcccacgacctgcg |
11161412 |
T |
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| Q |
396 |
tgaaccgtattggacttaagaaagattgtctaatctcggattcatctttattagattcggttatctttcattcgactatattggggattcatatgaccct |
495 |
Q |
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||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11161413 |
tgaaccgtattggacttaagaaagattctccaatctcgaattcatctttattagattcggttatctttcattcgactatattggggattcatatgaccct |
11161512 |
T |
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| Q |
496 |
taattcaaccgttttccgttctcaactagccacttaattatttttaggtgtaaac |
550 |
Q |
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| T |
11161513 |
taattcaactgttttccattctcaactagccacttaattatttttaggtgtaaac |
11161567 |
T |
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