View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11234_high_2 (Length: 406)
Name: NF11234_high_2
Description: NF11234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11234_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 137 - 390
Target Start/End: Original strand, 6235414 - 6235666
Alignment:
| Q |
137 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttagnnnnnnnttatgttcact |
236 |
Q |
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| T |
6235414 |
tgattatgctttaaatataaatgtactcaatcataaaacatactcattttcatataaatttctttttgatatcaacggtta-aaaaaaattatgttcact |
6235512 |
T |
|
| Q |
237 |
ggctaggatttacaccaatttgagttgcatatcaaattattaatagttaggtagcagaatagcacatgatgatccattaaatctcaatacagatgcctca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6235513 |
ggctaggatttacaccaatttgagttgcatatcaaattattaatagttaggtagcagaatagcacatgatgatccattaaatctcaatacagatgcctca |
6235612 |
T |
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| Q |
337 |
ctcctagtaccattgtgcttataaggagacaatataatttattcataccattgt |
390 |
Q |
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| T |
6235613 |
ctcctagtaccattgtgcttataaggagacaatataatttattcataccattgt |
6235666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 6235292 - 6235330
Alignment:
| Q |
10 |
atgaaggaacatgatcaaatacatcaataatcagatata |
48 |
Q |
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| T |
6235292 |
atgaaggaacatgatcaaatacatcaataattagatata |
6235330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 2973296 - 2973215
Alignment:
| Q |
137 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttag |
218 |
Q |
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| T |
2973296 |
tgattatgctttaaatataaatgtcctcaatcataaaacatactcattttcatataaatttctttttgatatcaacagttag |
2973215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 2975539 - 2975469
Alignment:
| Q |
137 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaaca |
213 |
Q |
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| T |
2975539 |
tgattatgctttaaatataaatgtcctcaatcataaaacatactcatttcc------atttctttttgatatcaaca |
2975469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 2972908 - 2972852
Alignment:
| Q |
308 |
atccattaaatctcaatacagatgcctcactcctagtaccattgtgcttataaggaga |
365 |
Q |
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| T |
2972908 |
atccattaaatctcaatacagatgcctcactccta-tatcattatgcttagaaggaga |
2972852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 2975677 - 2975638
Alignment:
| Q |
10 |
atgaaggaacatgatcaaatacatcaataatcagatatat |
49 |
Q |
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| T |
2975677 |
atgaaggaacatgatcaaatacatcaatattcagatatat |
2975638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 2973432 - 2973404
Alignment:
| Q |
10 |
atgaaggaacatgatcaaatacatcaata |
38 |
Q |
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| T |
2973432 |
atgaaggaacatgatcaaatacatcaata |
2973404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 310
Target Start/End: Original strand, 6026670 - 6026831
Alignment:
| Q |
149 |
aaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttagnnnnnnnttatgttcactggctaggattta |
248 |
Q |
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||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||| |||||||| |||| |||| ||||| | ||||||| | |
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| T |
6026670 |
aaatatatatgtactcaat---aaagcgtactcatttccatataaatttctttttattatcaacaattagatatttgttattttcacatg-taggattca |
6026765 |
T |
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| Q |
249 |
caccaatttgagttgcatatcaaattattaa----tagttaggtagcagaatagcacatgatgatc |
310 |
Q |
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||||| ||||| |||| ||||| |||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
6026766 |
caccagtttgaattgcctatcagattattaatagttagttaggtagtagaatagcacatggtgatc |
6026831 |
T |
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