View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11234_high_4 (Length: 370)
Name: NF11234_high_4
Description: NF11234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11234_high_4 |
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| [»] scaffold0164 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 51035909 - 51035576
Alignment:
| Q |
18 |
gaccaacacaaacaggggatgagaaaggaagaaagaagttcaggaaatttgaaatctctctgtccaaagttatgcatcattggctatttccctcatatct |
117 |
Q |
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| T |
51035909 |
gaccaacaaaaacatgggatgagaaaggaagaaagaagttcaggaaatttgaaatccctctgtccaaagttatgcatcattggctatttccctcatctct |
51035810 |
T |
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| Q |
118 |
gtaccgccacaaactaattttactctaattgcactgacaatnnnnnnnntaacaatttcttcaagacaaccactgcccaaatttattgattgtttccttc |
217 |
Q |
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| T |
51035809 |
gtaccgccacaaactaattttattctaattgcactaccaat-aaaaaaataacaatttcttcaagacgaccgctgcccaaatttattgattgtttccttc |
51035711 |
T |
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| Q |
218 |
catttaccgttagtcctttaccatatttaacttatacacgtattacttcttttctaatnnnnnnnnncatattccttctttgtagtgttaatttttgttc |
317 |
Q |
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| T |
51035710 |
aatttacctttagtcctttaccatatttaacttatacacgtattacttcttttctaataaaaaaaaacatattccttctttgtagtgttaatttttgttc |
51035611 |
T |
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| Q |
318 |
catagaggaagccacttcttatagcagaacgcatt |
352 |
Q |
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| T |
51035610 |
catagaggaagccacttcttatagcagagcgcatt |
51035576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 12637 - 12578
Alignment:
| Q |
285 |
catattccttctttgtagtgttaatttttgttccatagaggaagccacttcttatagcaga |
345 |
Q |
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| T |
12637 |
catattccttcttcgtagtgttaatttttg-tccataaaggaagccacttcttatagcaga |
12578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 12832 - 12780
Alignment:
| Q |
38 |
gagaaaggaagaaagaagttcaggaaatttgaaatctctctgtccaaagttat |
90 |
Q |
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| T |
12832 |
gagaaaggaagaaagaagttcaggaaatttgaaatccctctgcccaaagttat |
12780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 12757 - 12711
Alignment:
| Q |
207 |
ttgtttccttccatttaccgttagtcctttaccatatttaacttata |
253 |
Q |
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| T |
12757 |
ttgtttccttcaatttaccattagtccattaccatatttaatttata |
12711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 2249496 - 2249446
Alignment:
| Q |
287 |
tattccttctttgtagtgttaatttttgttccatagaggaagccacttctt |
337 |
Q |
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| T |
2249496 |
tatttcttctttgttgttttaatttttgttccataaaggaagccacttctt |
2249446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 18693810 - 18693764
Alignment:
| Q |
207 |
ttgtttccttccatttaccgttagtcctttaccatatttaacttata |
253 |
Q |
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| T |
18693810 |
ttgtttccttcaatttaccattagtccattaccatatttaatttata |
18693764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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