View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11234_low_16 (Length: 223)
Name: NF11234_low_16
Description: NF11234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11234_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 6500319 - 6500128
Alignment:
| Q |
16 |
cacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcaatcggactatgccgaggggatattatgccgaatagt |
115 |
Q |
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| T |
6500319 |
cacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcgatcggactatgccgaggggatattatgccaaatagt |
6500220 |
T |
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| Q |
116 |
tgccgcagttgcctcagcagcgccagaacaaatctcacacgtaattgtccaaatcgaaaagaggctattttttggtcagaagacgaaaaatg |
207 |
Q |
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| T |
6500219 |
tgccgcagttgcctcagtagcgccagaacaaatctcacacgtaattgtccaaatcgaaaagaggctattttttggtcagaagatgaaaaatg |
6500128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 47772945 - 47772986
Alignment:
| Q |
17 |
acagaaatcaactacggtttctacaatttttcacatggcgaa |
58 |
Q |
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| T |
47772945 |
acagaaatcaactacggtttctacaatttctcatatggcgaa |
47772986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 47718227 - 47718171
Alignment:
| Q |
16 |
cacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagt |
72 |
Q |
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| T |
47718227 |
cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagt |
47718171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 47713428 - 47713377
Alignment:
| Q |
21 |
aaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagt |
72 |
Q |
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| T |
47713428 |
aaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagt |
47713377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 47760346 - 47760292
Alignment:
| Q |
18 |
cagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagt |
72 |
Q |
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| T |
47760346 |
cagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagt |
47760292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 6517445 - 6517368
Alignment:
| Q |
19 |
agaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcaatcggactatgccgagg |
96 |
Q |
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| T |
6517445 |
agaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagagg |
6517368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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