View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11234_low_6 (Length: 306)
Name: NF11234_low_6
Description: NF11234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11234_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 34680730 - 34681017
Alignment:
| Q |
2 |
taaaacagccaccatcatgaccaactatttggttggagtattttgatgttgaatggaaaactataaagtcttgtatgtgctaatatatgagagaatgaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34680730 |
taaaacagccaccatcatgaccaactatttggttggagtattttgatgttgaatggaaa-ctataaagtcttgtatgtgctaatatatgagagaatgaac |
34680828 |
T |
|
| Q |
102 |
ccaaatcctacgcaagtacactaatttatattgcgcacactccttattgattggtttgtgccaaaaatccaacatggtattagagtctaattatatggcc |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34680829 |
ccaaatcctacgcatgtacactaatttatattgcgcacactccttactgattggtttgtgccaaaaatccaacatggtattagagtctaattatatggcc |
34680928 |
T |
|
| Q |
202 |
taatggcccatgttgatccaattataaaaaattcataaaaacatgagattaggtgatcaatgnnnnnnngtaggcatgtaactagtttg |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
34680929 |
taatggcccatgttgatccaattataaaaaattcataaaaacatgaggttaggtgatcaatgaaaaaaagtaggcatgtaactagtttg |
34681017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University