View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11234_low_7 (Length: 267)
Name: NF11234_low_7
Description: NF11234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11234_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 43875849 - 43875610
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcattcaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
43875849 |
cacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaa |
43875750 |
T |
|
| Q |
111 |
agtgtaagcaataaacagaattcgtagcttttcatagttatcatcctgtactatccatcattaccctttagagatttagaggctttagtttttgttgggt |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43875749 |
agtgtaagcaataaacagaattcgtagcttttcgtagttatcatcccgtactatccatcattaccctttagagatttagaggctttagtttttgttgggt |
43875650 |
T |
|
| Q |
211 |
cgatttttcaaatatctttgctttttaatgcttagatgtg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43875649 |
cgatttttcaaatatctttgctttttaatgcttagatgtg |
43875610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 36595840 - 36596006
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcattcaa |
110 |
Q |
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|||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
36595840 |
cacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat-aatactaaaaatacttactttacggaatacatggtggtacggcattcaa |
36595938 |
T |
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| Q |
111 |
agtgtaagcaataaacagaattcgtagcttttcatagttatcatcctgtactatccatcattaccctt |
178 |
Q |
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||| |||||||| |||||||||||||||||||| |||||| ||| |||| || ||||||||||||| |
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| T |
36595939 |
agtataagcaattaacagaattcgtagcttttcgtagttacattcccgtaccattcatcattaccctt |
36596006 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 48360009 - 48359843
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcattcaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48360009 |
cacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacggcattcaa |
48359910 |
T |
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| Q |
111 |
agtgtaagcaataaacagaattcgtagcttttcatagttatcatcctgtactatccatcattaccct |
177 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
48359909 |
agtgtaagcaataaacagaattcgtagcttttcgtagttatcatcccgtactatccatcattaccct |
48359843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 13050458 - 13050625
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcattcaa |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13050458 |
cacaaatcatggggtagtagcaattaaagtttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacggcattcaa |
13050557 |
T |
|
| Q |
111 |
agtgtaagcaataaacagaattcgtagcttttcatagttatcatcctgtactatccatcattaccctt |
178 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||| ||||| ||||||||||||||||||||| |
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| T |
13050558 |
agtgtaagcaataaatataattcgtagctttttgtagttaccatcccgtactatccatcattaccctt |
13050625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 33506959 - 33507126
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcattcaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
33506959 |
cacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaa |
33507058 |
T |
|
| Q |
111 |
agtgtaagcaataaacagaattcgtagcttttcatagttatcatcctgtactatccatcattaccctt |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |
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|
| T |
33507059 |
agtgtaagcaataaacagaattcgtagcttttcgtagttaccatcccgtactatccatcattaccctt |
33507126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 25943404 - 25943237
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcattcaa |
110 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
25943404 |
cacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat-aatactgaaaatacttactttacggaatacatggtggtacgacattcaa |
25943306 |
T |
|
| Q |
111 |
agtgtaagcaataaacagaattcgtagcttttcatagttatcatcctgtactatccatcattacccttt |
179 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||| |
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|
| T |
25943305 |
agtgtaagcaattaacagaattcgtagcttttcgtagttaccatcccgtaccatccatcattacccttt |
25943237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 13150533 - 13150700
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcattcaa |
110 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| | ||||||| |
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| T |
13150533 |
cacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat-aatactaaaaatacttactttacagaatacatggtggtacgacattcaa |
13150631 |
T |
|
| Q |
111 |
agtgtaagcaataaacagaattcgtagcttttcatagttatcatcctgtactatccatcattacccttt |
179 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| |||| |||| ||||||||||||||||| |
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| T |
13150632 |
agtgtaagcaattaacagaattcgtagcttttcgtagttaccatctcgtaccatccatcattacccttt |
13150700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 13002453 - 13002600
Alignment:
| Q |
11 |
cacagatcatggggtagtagcaattaaagcttgacaatcatca---cttgaattaatactaaaaatatttactttacggaatacatggtggtaaggcatt |
107 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||| |||||||||||||||| | |||| |
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| T |
13002453 |
cacaaatcatggggcagtggcaattaaagcttgacaatcatcatcacttgaat-aatgctaaaaatacttactttatggaatacatggtggtacgacatt |
13002551 |
T |
|
| Q |
108 |
caaagtgtaagcaataaacagaattcgtagcttttcatagttatcatcc |
156 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||| |||||| ||||| |
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| T |
13002552 |
caaagtgtaagcaattaacataattcgtagcttttcgtagttaccatcc |
13002600 |
T |
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