View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11234_low_9 (Length: 263)
Name: NF11234_low_9
Description: NF11234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11234_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 29025128 - 29024891
Alignment:
| Q |
13 |
agagaagtgcatgcgctctgggtttgtctataaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgatt-atttagc |
111 |
Q |
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| T |
29025128 |
agagaagtgcatgcgctctgggtttgtccataaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgatttatttagc |
29025029 |
T |
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| Q |
112 |
ttttatatgcagtaaaaatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttg |
211 |
Q |
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| T |
29025028 |
ttttatatgcagtaaaaatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttg |
29024929 |
T |
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| Q |
212 |
ttgtgtccagatattgacaagtttgagaaagaggtaag |
249 |
Q |
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| T |
29024928 |
ttgcatccagatattgacaagtttgagaaagaggtaag |
29024891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 36067797 - 36067547
Alignment:
| Q |
17 |
aagtgcatgcgctctgggtttgtctataaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgattatttagctttta |
116 |
Q |
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| T |
36067797 |
aagtgcatgcgctttgggtttttccttgaacttccaccatatttacttatcaatattttacatatttttagtttgaactgtgttgattatttagttgtaa |
36067698 |
T |
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| Q |
117 |
tat------------------gcagtaaaaatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgc |
198 |
Q |
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| T |
36067697 |
tatattttcttgtcatcaattgcagaaaaaatgaatgtcctgtttgtcgcacacattgtcctgaccaactctcactgagagatgatccaaattatgatgc |
36067598 |
T |
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| Q |
199 |
attgattgctttgttgtgtccagatattgacaagtttgagaaagaggtaag |
249 |
Q |
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| T |
36067597 |
attgattgctttgctctgtccggatattgacaagtttgagaaagaggtaag |
36067547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 35151966 - 35151878
Alignment:
| Q |
161 |
acccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgtgtccagatattgacaagtttgagaaagaggtaag |
249 |
Q |
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| T |
35151966 |
acccaactctcaccgagagatgatccaaattatgatgcattgattgctttgctccatttagatattgacaaatttgagaaagaggtaag |
35151878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 35152147 - 35152090
Alignment:
| Q |
43 |
taaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtatt |
100 |
Q |
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| T |
35152147 |
taaacttccaccatctttacttatcaatatttcacatatttttagtttggattgtatt |
35152090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 35139663 - 35139536
Alignment:
| Q |
121 |
cagtaaaaatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgtgtcca |
220 |
Q |
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|||||| |||||||||||| ||| || ||||||||| ||| || || |||||||||||| || ||||| |||||||| ||||||||| | | |||| |
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| T |
35139663 |
cagtaacaatgaatgtcctgcttgccgaacacattgtgctagccgacgctcactgagagacgacccaaactatgatgctttgattgctgctatctatcca |
35139564 |
T |
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| Q |
221 |
gatattgacaagtttgagaaagaggtaa |
248 |
Q |
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| T |
35139563 |
gatattgacaagtatgaggaagaggtaa |
35139536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 21547879 - 21547800
Alignment:
| Q |
128 |
aatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgc |
207 |
Q |
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| T |
21547879 |
aatgaatgccctacatgtcgtacacattttcctagccgacgtgcactgagagatgatccaaactatgatgctttgattgc |
21547800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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