View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11235_high_2 (Length: 595)
Name: NF11235_high_2
Description: NF11235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11235_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Complemental strand, 1674595 - 1674035
Alignment:
| Q |
18 |
atcaggagtttgtggcaacaaaatactacaagcttcctctaaagaagaaaccctaaacaaaccatttttcatatcaatctcctccaaacaaacaccagca |
117 |
Q |
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| T |
1674595 |
atcaggagtttgtggcaacaaaatactacaagcttcctctaaagaagaaaccctaaacaaaccatttttcatatcaatctcctccaaacaaacaccagca |
1674496 |
T |
|
| Q |
118 |
caacacaaagccaacttctccaccacctcaggaaactgagcagccaaactataccctacaaaccctccatagcttataccaaccaagctcaatctattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674495 |
caacacaaagccaacttctccaccacctcaggaaactgagcagccaaactataccctacaaaccctccatagcttataccaaccaagctcaatctattca |
1674396 |
T |
|
| Q |
218 |
caccatgagcctccatgagcttcttcaaacacaaagcttgaaaagactctgtcctctctggccttgaagtgaatgatccaccaaagaagagaagatcagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674395 |
caccatgagcctccatgagcttcttcaaacacaaagcttgaaaagactctgtcctctctggccttgaagtgaatgatccaccaaagaagagaagatcagg |
1674296 |
T |
|
| Q |
318 |
cacatataaattgaactgtctgatgaaatgatgaagatgttcaccatattgccacattgcattggcgccaaaaccatgaacaagaacaagagatggttta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674295 |
cacatataaattgaactgtctgatgaaatgatgaagatgttcaccatattgccacattgcattggcgccaaaaccatgaacaagaacaagagatggttta |
1674196 |
T |
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| Q |
418 |
catgggttgtgtaacttaggcacccaacaatgcatggtggttccgtcgccgagatcggtcacaacggaccggagaccggcgacggtgaaggaatgacggt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674195 |
catgggttgtgtaacttaggcacccaacaatgcatggtggttccgtcgccgagatcggtcacaacggaccggagaccggcgacggtgaaggaatgacggt |
1674096 |
T |
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| Q |
518 |
ataaccagtctcttgaagcggcaaaactgacgcattttgaaaacttagacaacatagaaag |
578 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674095 |
ataaccagtctcttgaagcggcaaaactgacgcattttgaaaacttagacaacatagaaag |
1674035 |
T |
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