View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11235_low_1 (Length: 612)
Name: NF11235_low_1
Description: NF11235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11235_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 51337886 - 51337290
Alignment:
| Q |
1 |
agtttgtaagtcttcagccaccaccaacaatgaagcttgatacgtacgagtaaccgatattgggtgatttgcttattgctgaaaaatcttgaatacgctc |
100 |
Q |
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| T |
51337886 |
agtttgtaagtcttcagccaccaccaacaatgaagcttgatacatacgagtaaccgatattgggtgatttgcttattgctgaaaaatcttgaatacgctc |
51337787 |
T |
|
| Q |
101 |
ttttcaaatgactcagatacatgtcaaccagatcacttgaaaacaaaatcgaatatcctttctgaatgcatgtgcgccaccaaactgaagacatgataac |
200 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51337786 |
tttccaaatgacccagatacatgtcaaccagatcacttgaaaacaaaatcgaatatcctttctgaaggcatgtgcgccaccaaactgaagacatgataac |
51337687 |
T |
|
| Q |
201 |
taatattcgctggaagaacaataacacacacacctgaccaacgaggaactaggttcaaggtactgctaaagaaaccacactctataaaaagaagattcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51337686 |
taatattcgctggaagaacaataacacacacacctgaccaatgaagaactaggttcaaggtactgctaaagaaaccacactctataaaaagaagattcat |
51337587 |
T |
|
| Q |
301 |
cgtttcttccctactgcaatctcccacagataacaatgagtcagtaggtgtaactcctcccaaaagtaaattatattcggaattctcttgagaattattt |
400 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
51337586 |
cgtttcttccctactgcaacctcccacacataacaatgagtcagtaggggtaactcctcccaaaagtaaattatagtcgaaattctcttgagaattattt |
51337487 |
T |
|
| Q |
401 |
ttcacaaaaagagagatactttaagaggtacaattttattccaaattaagtctgaatgcattgtcagcattaagtaaattagttctttcatcctaaaatt |
500 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
51337486 |
ttcacgcaaagagagacactttaagaggtacaactttattccaaattaaatctgaatgcattgtcagtattaagtaaattagttctttcgtcctaaaatt |
51337387 |
T |
|
| Q |
501 |
gagttagactatatgttgaagaatgaaatctctacattattcttagttatttatatgaaataaccaaatgtttgactacaaactaaaggaacataat |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51337386 |
gagttagactatatgttgaagaatgaaatctctacattattcttagttatttatatgaaataaccaaatgtttgactacaaactaaaggaacataat |
51337290 |
T |
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