View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11235_low_3 (Length: 585)
Name: NF11235_low_3
Description: NF11235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11235_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 25495304 - 25494740
Alignment:
| Q |
1 |
atgaccttgatgcggcggttaatttagccgacatgctgcaattgcgatcacgagactggtttttactgtttgttgagaaatttttggatagtgatggaga |
100 |
Q |
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| T |
25495304 |
atgaccttgatgcggcggttaatttagccgacatgctgcaattgcgatcacgagactggtttttattgtttgttgagaaatttttggatagtgatggaga |
25495205 |
T |
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| Q |
101 |
cattggtttgtcaaacaatggtcaaatagcaggcattctcactcaactaaaaagcgtcaacgattggttggatgagataggatcgagcaagaacgaggga |
200 |
Q |
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| T |
25495204 |
cattggtttgtcaaacaatggtcaaatagcaggcattctcactcaactaaaaagcgtcaacgattggttggatgagataggatcgagcaagaacgaggga |
25495105 |
T |
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| Q |
201 |
gaattgtgccagataccaacagagacagttgataggctcaggaagaagatatatgaatatcttcttacacatgttgaatctgctgctgctgcacttactt |
300 |
Q |
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| T |
25495104 |
gaattgtgccagataccaacagagacaattgataggctcaggaagaagatatatgaatatcttcttacacatgttgaatctgctgctgctgcacttactt |
25495005 |
T |
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| Q |
301 |
gtgactcacattcacaatcaacagagattaaaggcaaaaagtgatatatgaatatatgatgaagtacatagcttagcttaaggatgcattattatggtgg |
400 |
Q |
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| T |
25495004 |
gtgactcacagtcacaatcaacagagattaaaggcaaaaggtgatatatgaatatatgatgaagtacatagcttagcttaaggatgcattattatggtgg |
25494905 |
T |
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| Q |
401 |
cttggaggaaatttggtcaccnnnnnnnntcaaaattctcttttccac-nnnnnnnngtacataaatcctacatgggtttgaggtatagttggagttctg |
499 |
Q |
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| T |
25494904 |
cttggaggaaatttggtcaccaaaaaaaatcaaaattctcttttccactttttttttgtacataaatcctacatgggtttgaggtatagttggagttctg |
25494805 |
T |
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| Q |
500 |
attatttatttggggaaacaataaatgtgaaatgtgaggattttgttttgttttccttttacaaa |
564 |
Q |
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| T |
25494804 |
attatttatttggggaaacaataaatgtgaaatgtgaggattttgttttgttttccttttacaaa |
25494740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 42464971 - 42464784
Alignment:
| Q |
108 |
ttgtcaaacaatggtcaaatagcaggcattctcactcaactaaaaagcgtcaacgattggttggatgagataggatcgagcaagaacgagggagaattgt |
207 |
Q |
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|||||| | ||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| || |||||||| |||||| | || |||||||||| |
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| T |
42464971 |
ttgtcagataatggccaaatagcaggtatgctcactcaactgaagagcgtaaacgattggttagacgagataggggttagcaaggatgaaggagaattgt |
42464872 |
T |
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| Q |
208 |
gccagataccaacagagacagttgataggctcaggaagaagatatatgaatatcttcttacacatgttgaatctgctgctgctgcact |
295 |
Q |
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| T |
42464871 |
gtcagatatcggcagagacaatcaaccggttgagaaagaagatatatgaatatcttcttacacatgttgaatctgccgctgctgcact |
42464784 |
T |
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