View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11235_low_5 (Length: 399)

Name: NF11235_low_5
Description: NF11235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11235_low_5
NF11235_low_5
[»] chr5 (6 HSPs)
chr5 (201-375)||(43379379-43379553)
chr5 (201-311)||(43378572-43378682)
chr5 (200-311)||(11336275-11336386)
chr5 (201-375)||(11343688-11343858)
chr5 (201-300)||(3636365-3636464)
chr5 (194-300)||(33529729-33529834)
[»] chr2 (7 HSPs)
chr2 (18-199)||(14538293-14538492)
chr2 (201-311)||(10148572-10148682)
chr2 (201-312)||(10147786-10147897)
chr2 (194-300)||(16871513-16871618)
chr2 (200-311)||(39062858-39062969)
chr2 (201-311)||(34229033-34229143)
chr2 (143-199)||(14553813-14553869)
[»] chr6 (3 HSPs)
chr6 (271-375)||(13208156-13208260)
chr6 (201-311)||(13207346-13207456)
chr6 (255-312)||(10838146-10838204)
[»] chr7 (11 HSPs)
chr7 (201-311)||(42252829-42252942)
chr7 (201-311)||(42253035-42253144)
chr7 (201-300)||(48204046-48204145)
chr7 (201-301)||(46294641-46294741)
chr7 (200-311)||(35752325-35752435)
chr7 (199-311)||(35753023-35753139)
chr7 (201-311)||(18947286-18947396)
chr7 (201-311)||(18948212-18948322)
chr7 (207-281)||(46295636-46295710)
chr7 (250-311)||(43492978-43493039)
chr7 (201-237)||(25675779-25675815)
[»] chr8 (11 HSPs)
chr8 (201-321)||(42578709-42578829)
chr8 (206-311)||(42503031-42503136)
chr8 (199-311)||(42503880-42503992)
chr8 (201-311)||(41889323-41889434)
chr8 (199-300)||(39308666-39308767)
chr8 (207-300)||(39309638-39309731)
chr8 (201-281)||(6462604-6462684)
chr8 (206-301)||(28584353-28584448)
chr8 (250-303)||(3572124-3572177)
chr8 (260-312)||(38443754-38443806)
chr8 (195-263)||(43235425-43235493)
[»] chr4 (5 HSPs)
chr4 (200-322)||(39310395-39310518)
chr4 (206-322)||(24484788-24484905)
chr4 (201-301)||(9483632-9483732)
chr4 (255-312)||(32158853-32158911)
chr4 (201-311)||(39311330-39311440)
[»] scaffold0151 (1 HSPs)
scaffold0151 (253-311)||(20792-20850)
[»] chr3 (5 HSPs)
chr3 (250-311)||(17057152-17057213)
chr3 (199-299)||(34936713-34936813)
chr3 (201-300)||(34329358-34329457)
chr3 (201-290)||(55444560-55444649)
chr3 (201-241)||(40613828-40613868)
[»] chr1 (1 HSPs)
chr1 (201-311)||(15668237-15668348)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 201 - 375
Target Start/End: Complemental strand, 43379553 - 43379379
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  301 ggtttggaaaatcaattgtttagtaaataaaaagaagccacacgcacactcttctggttcaaagttcacacgacc 375  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43379453 ggtttggaaaatcaattgtttagtaaataaaaagaagccacgcgcacactcttctggttcaaagttcacacgacc 43379379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 43378572 - 43378682
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| | |||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  301 ggtttggaaaa 311  Q
    |||||| ||||    
T  43378672 ggtttgaaaaa 43378682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 11336275 - 11336386
Alignment:
Q  200 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 299  Q
    |||||||||||||  |||||||| |||| ||||||||  |||  ||||||| |||| ||||||||||||  |||| ||||||||||||| || |||||||    
T  11336275 cgagttcatctttcttccatttaggaagcctccattttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaa 11336374  T
Q  300 aggtttggaaaa 311  Q
    ||||||||||||    
T  11336375 aggtttggaaaa 11336386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 375
Target Start/End: Complemental strand, 11343858 - 11343688
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||||||  |||||||||||||  ||||||||| ||||      |||||| ||| ||||||||| |||||||||||||||||   |  |||||| |    
T  11343858 gagttcatcttccctccatttatgaaacctccatttaccccaa-----ctcttatatgggtgacatgtggcaaaaataaaagcaagaattgggattaata 11343764  T
Q  301 ggtttgg-aaaatcaattgtttagtaaataaaaagaagccacacgcac--actcttctggttcaaagttcacacgacc 375  Q
    ||||||| |||| |||||||||| |||  |||||||||||||||||||  |||||||| ||||||| |||||||||||    
T  11343763 ggtttggaaaaagcaattgtttaataa--aaaaagaagccacacgcacttactcttctagttcaaacttcacacgacc 11343688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 3636464 - 3636365
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||||||||||||||||| ||||||||||||| |||| || || ||| ||||||  |||||||| | |||| |||||  ||||| | |||||||||    
T  3636464 gagttcatctttgctccatttaagaaggctccatttttcccttttcaactcatagatgactgacatgtggaaaaattaaaattaagggttgagattaaaa 3636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 33529729 - 33529834
Alignment:
Q  194 caaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaag 293  Q
    ||||| ||||||||||||||||||||||| ||||  || |||||||||||| || ||| ||||||  |||||||| || ||| |||||  ||||||| ||    
T  33529729 caaaaacgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtggc-aaactaaaacgaagggctgag 33529827  T
Q  294 attaaaa 300  Q
    |||||||    
T  33529828 attaaaa 33529834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 14538492 - 14538293
Alignment:
Q  18 aaatcaatcaaacagccaccttggtctgtattcctctcctacataaaggc------------------tagactgactgacacaacagctgtgctcgcca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||    
T  14538492 aaatcaatcaaacagccaccttggtctgtattcctctcctacataaaggcagacagtcagattttctctagactgactgacacaacagctgtgctcgcca 14538393  T
Q  100 taaagggagaagatcccatttttgcaaatatctaaagagtagttaaacattctccaaaatataaaatgaaagaactcggcaattcatgtctggtcaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14538392 taaagggagaagatcccatttttgcaaatatctaaagagtagttaaacattctccaaaatataaaatgaaagaactcggcgattcatgtctggtcaaaat 14538293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 10148682 - 10148572
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    ||||||| |||  ||||||||| |||| ||||||||| |||||| ||   ||| |||||||||||||| | |||||||||| |||||| | |||||||||    
T  10148682 gagttcaacttcactccatttaggaagcctccatttaccccatttcattccttggatgtgtgacatgtggtaaaaataaaatcaagggttgagattaaaa 10148583  T
Q  301 ggtttggaaaa 311  Q
     ||||||||||    
T  10148582 agtttggaaaa 10148572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 10147786 - 10147897
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    ||||||| |||  ||||| ||| |||| |||||||||||||||| ||    || |||||||||||||| |||||||||||| |||| | | |||||||||    
T  10147786 gagttcaacttcactccagttaggaagcctccatttatcccatttcattcgttggatgtgtgacatgtggcaaaaataaaatcaagcgttgagattaaaa 10147885  T
Q  301 ggtttggaaaat 312  Q
     |||||||||||    
T  10147886 agtttggaaaat 10147897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 300
Target Start/End: Complemental strand, 16871618 - 16871513
Alignment:
Q  194 caaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaag 293  Q
    ||||| ||||||||||||||||||||||| ||||  || |||||||||||| || ||| ||||||  |||||||| || ||| |||||  ||||||| ||    
T  16871618 caaaaacgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtggc-aaactaaaacgaagggctgag 16871520  T
Q  294 attaaaa 300  Q
    |||||||    
T  16871519 attaaaa 16871513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 39062969 - 39062858
Alignment:
Q  200 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 299  Q
    ||||| |||||||| ||||||||||   | || ||||| || ||| ||  || ||||||| |||||||| |||| ||||||| ||| ||||| |||||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtggcaacaataaaatcaatggctaggattaaa 39062870  T
Q  300 aggtttggaaaa 311  Q
    ||||||||||||    
T  39062869 aggtttggaaaa 39062858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 34229143 - 34229033
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||||  |  || |||||||||||||||| | |||||||||| ||| |||| |||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  301 ggtttggaaaa 311  Q
    | |||| ||||    
T  34229043 gctttgaaaaa 34229033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 14553869 - 14553813
Alignment:
Q  143 taaacattctccaaaatataaaatgaaagaactcggcaattcatgtctggtcaaaat 199  Q
    |||||||||||||||||| ||||||||||||| |||  |  |||| |||||||||||    
T  14553869 taaacattctccaaaataaaaaatgaaagaacacggtgaaccatgactggtcaaaat 14553813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 13208260 - 13208156
Alignment:
Q  271 caaaaataaaagcaagggctaagattaaaaggtttggaaaatcaattgtttagtaaataaaaagaagccacacgcacactcttctggttcaaagttcaca 370  Q
    |||||||||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13208260 caaaaataaaagcaagggttgggattaaaaggtttggaaaattaattgtttagtaaataaaaagaagccacgcgcacactcttctggttcaaagttcaca 13208161  T
Q  371 cgacc 375  Q
    |||||    
T  13208160 cgacc 13208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 13207346 - 13207456
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  301 ggtttggaaaa 311  Q
    | |||| ||||    
T  13207446 gatttgaaaaa 13207456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 10838146 - 10838204
Alignment:
Q  255 gatgtgtgacatgtagcaa-aaataaaagcaagggctaagattaaaaggtttggaaaat 312  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||| |||| ||||||    
T  10838146 gatgtgtgacatgtggcaacaaataaaaccaagggctaagattaaaaagtttagaaaat 10838204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 42252829 - 42252942
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacat---gtagcaaaaataaaagcaagggctaagatta 297  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||| |||||||   || |||||||||||||||| |||| ||||||    
T  42252829 gagttcatctttgctccatttatgaagcctccatttaccacattccagcttttagatgcgtgacatatggtggcaaaaataaaagcaaaggctgagatta 42252928  T
Q  298 aaaggtttggaaaa 311  Q
    ||||||||||||||    
T  42252929 aaaggtttggaaaa 42252942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 42253144 - 42253035
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |  ||||||||||| |||||||| |||||||||    
T  42253144 gagttcatgtttgctccatttatgaagcctcaatttatcccattccaactcttagatgtgtgacat-tgtcaaaaataaaaacaagggctgagattaaaa 42253046  T
Q  301 ggtttggaaaa 311  Q
    | |||| ||||    
T  42253045 gatttgaaaaa 42253035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 48204145 - 48204046
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||||||||||| ||||| ||||||||||||| |||| || || ||| |||||   |||||||| |||||| |||||  ||||| | |||||||||    
T  48204145 gagttcatctttgctcaatttaagaaggctccatttttcccttttcacctcatagataactgacatgtggcaaaattaaaattaagggttgagattaaaa 48204046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 46294641 - 46294741
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||| ||||||||||||||||   ||||||||||||||||| ||  |  || |||||||||||||| |  ||| ||||||| |||||| || ||||||||    
T  46294641 gagtgcatctttgctccatttgcaaaggctccatttatccctttttacttcatagatgtgtgacatatgacaataataaaatcaagggttaggattaaaa 46294740  T
Q  301 g 301  Q
    |    
T  46294741 g 46294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 35752325 - 35752435
Alignment:
Q  200 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 299  Q
    ||||||||| ||||||||||||  |   |||| |||||||||||| ||  || ||||||| |||||||| |||||||||||| ||| || |  |||||||    
T  35752325 cgagttcatgtttgctccattttggtttgctcaatttatcccatttcaa-tcatagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaa 35752423  T
Q  300 aggtttggaaaa 311  Q
    ||||||| ||||    
T  35752424 aggtttgaaaaa 35752435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 35753139 - 35753023
Alignment:
Q  199 tcgagttcatctttgctccatttatgaaggctccatttat----cccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaaga 294  Q
    |||||| |||||||||||||||||||    ||| ||||||    |||||| ||  || ||||||| |||||||| |||||||||||| ||| ||||  ||    
T  35753139 tcgagtccatctttgctccatttatgtttactcaatttatttaccccatttcacgtcatagatgtatgacatgtggcaaaaataaaatcaatggctgtga 35753040  T
Q  295 ttaaaaggtttggaaaa 311  Q
    ||||||| |||||||||    
T  35753039 ttaaaagatttggaaaa 35753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 18947286 - 18947396
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||| ||||||||||||||||| | || |||||||||| ||||| ||  || |||||||  ||||||| ||||| |||||| ||| || | |||||| ||    
T  18947286 gagtgcatctttgctccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagattagaa 18947385  T
Q  301 ggtttggaaaa 311  Q
    || || |||||    
T  18947386 ggcttagaaaa 18947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 18948322 - 18948212
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||| ||||||||||||||||| | || || ||||||| ||||| ||  || | ||||| |||||||| ||||| ||||||  || |||| |||||||||    
T  18948322 gagtgcatctttgctccatttagggagccttcatttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagattaaaa 18948223  T
Q  301 ggtttggaaaa 311  Q
    || || |||||    
T  18948222 ggcttagaaaa 18948212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 46295710 - 46295636
Alignment:
Q  207 atctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaa 281  Q
    ||||||||||||||||| || |||||||||||||| || ||  |  |||||||||||||||| || |||| ||||    
T  46295710 atctttgctccatttatcaatgctccatttatcccttttcattttatagatgtgtgacatgtggctaaaacaaaa 46295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 43493039 - 43492978
Alignment:
Q  250 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 311  Q
    ||||||||||||||||  | |||||||| ||| ||| || | ||||||||||||||||||||    
T  43493039 tcttagatgtgtgacacatggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaa 43492978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 25675815 - 25675779
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccattta 237  Q
    ||||||||||||||||||||||||  |||||||||||    
T  25675815 gagttcatctttgctccatttatgttggctccattta 25675779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 42578709 - 42578829
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||| |||||||||||||||||||   |||| ||||| |||||| ||  || ||||||| |||||||| |||||||||||| ||| |||| |||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  301 ggtttggaaaatcaattgttt 321  Q
    | ||||||||| || ||||||    
T  42578809 gatttggaaaagcacttgttt 42578829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 42503031 - 42503136
Alignment:
Q  206 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggttt 305  Q
    ||||||||||||||||| |    ||| ||||| |||||| ||  || |||||||||||||||||| |||||||||| ||| ||||  |||||||||||||    
T  42503031 catctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgtagaaaaaataaaatcaatggctgtgattaaaaggttt 42503130  T
Q  306 ggaaaa 311  Q
    ||||||    
T  42503131 ggaaaa 42503136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 42503992 - 42503880
Alignment:
Q  199 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 298  Q
    |||||| ||||||||||||||||| |    ||| ||||| |||||||||  || |||||||||||||||| | ||||||||||  || ||||  ||||||    
T  42503992 tcgagtccatctttgctccatttaggcttcctcaatttaccccattccatatcatagatgtgtgacatgtggaaaaaataaaattaatggctgtgattaa 42503893  T
Q  299 aaggtttggaaaa 311  Q
    |||||||||||||    
T  42503892 aaggtttggaaaa 42503880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 41889323 - 41889434
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaat-aaaagcaagggctaagattaaa 299  Q
    |||| |||||||| |||||||| ||||||||||||||  || || ||    || |||||||||||||| |||||||| |||| |||||||| ||||||||    
T  41889323 gagtccatctttgttccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagggctgagattaaa 41889422  T
Q  300 aggtttggaaaa 311  Q
    ||| ||||||||    
T  41889423 agggttggaaaa 41889434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 39308666 - 39308767
Alignment:
Q  199 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 298  Q
    |||||| ||||||||||||||||| |||  ||||||||||||| || || ||| ||||||  |||||||| |||||| |||||  |||||||  ||||||    
T  39308666 tcgagtccatctttgctccatttaggaaacctccatttatcccttttcacctcatagatgactgacatgtggcaaaactaaaatgaagggctgggattaa 39308765  T
Q  299 aa 300  Q
    ||    
T  39308766 aa 39308767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 39309731 - 39309638
Alignment:
Q  207 atctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||||||||||| |||  ||||||||||||| || || ||| ||||||  |||||||| ||||||  ||||  ||||||| |||||||||    
T  39309731 atctttgctccatttaggaaacctccatttatcccttttcacctcatagatgattgacatgtggcaaaacaaaaatgaagggctgagattaaaa 39309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 6462684 - 6462604
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaa 281  Q
    |||| |||||||||||||||||||   |||| ||||| |||||| ||  || ||||||| |||||||| ||||||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtggcaaaaataaaa 6462604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 28584448 - 28584353
Alignment:
Q  206 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaag 301  Q
    ||||||||||||||||| ||   |||||||||||||  |    ||||||||| ||||||| || |||||||||||| |||||||  ||||||||||    
T  28584448 catctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacacgtggcaaaaataaaaccaagggccgagattaaaag 28584353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 3572177 - 3572124
Alignment:
Q  250 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggt 303  Q
    ||||||||||||||||||| ||||||||||||  |||  ||| |||||||||||    
T  3572177 tcttagatgtgtgacatgtggcaaaaataaaacaaagtactaggattaaaaggt 3572124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 38443754 - 38443806
Alignment:
Q  260 gtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaat 312  Q
    ||||||||||| |||||||||| ||| | ||  ||||||||||||||||||||    
T  38443754 gtgacatgtagaaaaaataaaatcaatgactgtgattaaaaggtttggaaaat 38443806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 43235425 - 43235493
Alignment:
Q  195 aaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtga 263  Q
    ||||| |||| |||||||||||||||||  ||| ||||||||||||| || ||  || |||||||||||    
T  43235425 aaaatggagtgcatctttgctccatttaccaagcctccatttatcccttttcacttcatagatgtgtga 43235493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 39310395 - 39310518
Alignment:
Q  200 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 299  Q
    ||||| ||||||||||||||||| ||   ||| |||||||||||| ||  |  ||||||| |||||||| | |||||||||| ||| |||| ||||||||    
T  39310395 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 39310494  T
Q  300 aggtttggaaaat-caattgttta 322  Q
    || |||| ||||| ||||||||||    
T  39310495 agctttgaaaaatgcaattgttta 39310518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 24484788 - 24484905
Alignment:
Q  206 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggttt 305  Q
    ||||||||||||||||| ||   ||| |||||||| ||| ||  |  |||||||||||||||| | |||||||||| ||| |||| |||||||||| |||    
T  24484788 catctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaagcttt 24484887  T
Q  306 ggaaaat-caattgttta 322  Q
    | ||||| ||||||||||    
T  24484888 gaaaaatgcaattgttta 24484905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 9483732 - 9483632
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||| ||||||||||||||||   |||| |||||||||||| || ||  || |||||||||||||||| || | |||||||  ||||| || ||||||||    
T  9483732 gagtgcatctttgctccatttgcaaaggttccatttatcccttttcacttcatagatgtgtgacatgtggccataataaaattaagggttaggattaaaa 9483633  T
Q  301 g 301  Q
    |    
T  9483632 g 9483632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 32158853 - 32158911
Alignment:
Q  255 gatgtgtgacatgtagcaaaa-ataaaagcaagggctaagattaaaaggtttggaaaat 312  Q
    |||||||||||||||||||||  ||||| |||||||  |||||||||||||| ||||||    
T  32158853 gatgtgtgacatgtagcaaaagttaaaaccaagggcagagattaaaaggtttagaaaat 32158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 39311440 - 39311330
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||||  |  || |||||||||||||||| | |||||||||| |||  ||| |||||||||    
T  39311440 gagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaatcaattgctgagattaaaa 39311341  T
Q  301 ggtttggaaaa 311  Q
    | |||| ||||    
T  39311340 gctttgaaaaa 39311330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 20792 - 20850
Alignment:
Q  253 tagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 311  Q
    |||||||||||||||| | |||||||||| ||| |||| ||||||||||||||||||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttggaaaa 20850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 17057152 - 17057213
Alignment:
Q  250 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 311  Q
    |||||||||||||||| || |||||||| ||| ||| || | ||||||||||||||||||||    
T  17057152 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaa 17057213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 34936713 - 34936813
Alignment:
Q  199 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 298  Q
    |||||| |||||||||||||||||  |   ||||||||||||| || ||  || ||||| |||||||||| |||||||||||| ||| ||||  ||||||    
T  34936713 tcgagtgcatctttgctccatttaccatacctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaatggcttggattaa 34936812  T
Q  299 a 299  Q
    |    
T  34936813 a 34936813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 34329358 - 34329457
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 300  Q
    |||||||||||||||||||||| |   |||| |||||||||||||||   | ||||||| || ||||| ||||||| |||  |||||| | |||||||||    
T  34329358 gagttcatctttgctccatttaggcgtgctcaatttatcccattccaagacatagatgtatgtcatgtggcaaaaacaaattcaagggttgagattaaaa 34329457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 55444649 - 55444560
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggct 290  Q
    |||| |||||||||| |||||| ||| |||||||||||||| || ||  |  | |||||||||||||| |||||  ||||| ||||||||    
T  55444649 gagtccatctttgcttcatttaagaatgctccatttatcccttttcactttattgatgtgtgacatgtggcaaatgtaaaaacaagggct 55444560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 40613868 - 40613828
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatccc 241  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccc 40613828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 15668348 - 15668237
Alignment:
Q  201 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaat-aaaagcaagggctaagattaaa 299  Q
    |||| ||||||||||||||||| ||||||||||||||  || || ||    || |||||||||||||| |||||||| |||| |||| | |  |||||||    
T  15668348 gagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagtgatgggattaaa 15668249  T
Q  300 aggtttggaaaa 311  Q
    ||| ||||||||    
T  15668248 agggttggaaaa 15668237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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