View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11235_low_6 (Length: 363)

Name: NF11235_low_6
Description: NF11235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11235_low_6
NF11235_low_6
[»] chr5 (9 HSPs)
chr5 (30-351)||(27271208-27271540)
chr5 (30-140)||(1833096-1833206)
chr5 (30-140)||(40318562-40318672)
chr5 (30-140)||(41408868-41408978)
chr5 (73-175)||(31481325-31481427)
chr5 (202-246)||(3293745-3293789)
chr5 (202-246)||(10711675-10711719)
chr5 (203-239)||(28641694-28641730)
chr5 (30-83)||(31481263-31481316)
[»] chr7 (4 HSPs)
chr7 (202-351)||(36924529-36924686)
chr7 (202-239)||(21312019-21312056)
chr7 (202-235)||(23572435-23572468)
chr7 (202-239)||(41082264-41082301)
[»] chr8 (4 HSPs)
chr8 (30-181)||(30088332-30088481)
chr8 (73-191)||(13801396-13801514)
chr8 (30-91)||(13801334-13801395)
chr8 (202-246)||(26647257-26647301)
[»] chr3 (5 HSPs)
chr3 (73-191)||(33214272-33214390)
chr3 (73-191)||(29834880-29834998)
chr3 (115-193)||(43098335-43098413)
chr3 (30-91)||(29834999-29835060)
chr3 (30-89)||(43098231-43098290)
[»] chr1 (4 HSPs)
chr1 (73-191)||(47035375-47035493)
chr1 (202-239)||(9949141-9949178)
chr1 (202-239)||(31730893-31730930)
chr1 (202-232)||(41945770-41945800)
[»] scaffold0002 (1 HSPs)
scaffold0002 (115-193)||(362210-362288)
[»] chr6 (3 HSPs)
chr6 (30-195)||(1068077-1068239)
chr6 (115-181)||(14778826-14778892)
chr6 (30-89)||(14779347-14779406)
[»] scaffold0197 (1 HSPs)
scaffold0197 (202-239)||(26292-26329)
[»] scaffold0006 (1 HSPs)
scaffold0006 (202-239)||(71688-71725)
[»] scaffold0041 (1 HSPs)
scaffold0041 (202-239)||(99396-99433)
[»] chr4 (2 HSPs)
chr4 (202-239)||(564299-564336)
chr4 (202-239)||(53232833-53232870)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 351
Target Start/End: Original strand, 27271208 - 27271540
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgtt--------gctcattcacgttgccaatttcaattagtttttccttttcattcacg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  27271208 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgcattgttgctcattcacgttgctaatttcaattaatttttccatttcattcacg 27271307  T
Q  122 ctagctattgcatcatttaggaccttgagaatttttgttttacgattatttaattccaatccttgttagtttcattcaggg---gagccacacacaaggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  27271308 ctagctattgcatcatttaggaccttgagaatttttgttttacaattatttaattccaatccttgttagtttcattcaggggcagagccacacacaaggt 27271407  T
Q  219 tgtgtgggctcctgcctgcactaaatttac-nnnnnnnntaattaatactattgatagttttaatctaataataaatgatgataggtgctaatagattta 317  Q
    |||||||||| |||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27271408 tgtgtgggct-ctgcctgcactaaatttacaaaaaaaaagaattaatactattgatagttttaatctaataataaatgatgataggtgctaatagattta 27271506  T
Q  318 atctaataaaaaacgatgatagatgctaatgatg 351  Q
    ||||||||||||| ||||||||||||||||||||    
T  27271507 atctaataaaaaatgatgatagatgctaatgatg 27271540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 1833206 - 1833096
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctat 129  Q
    |||||||||| ||||||||||||||||  ||  |||| |||| || |||||||||||| | ||||||||||| | ||||  |||||||||||||||||||    
T  1833206 ttcaattgtctctttattctttgcatttgcgccgccattgatattactcattcacgtttctaatttcaattattgtttctatttcattcacgctagctat 1833107  T
Q  130 tgcatcattta 140  Q
    |||||| ||||    
T  1833106 tgcatcgttta 1833096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 40318672 - 40318562
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctat 129  Q
    |||||||||| ||||||||||||||||  ||  |||| |||| || |||||||||||| | ||||||||||| | ||||  |||||||||||||||||||    
T  40318672 ttcaattgtctctttattctttgcatttgcgccgccattgatattactcattcacgtttctaatttcaattattgtttctatttcattcacgctagctat 40318573  T
Q  130 tgcatcattta 140  Q
    |||||| ||||    
T  40318572 tgcatcgttta 40318562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 41408868 - 41408978
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctat 129  Q
    |||||||||| ||||||||||||||||  ||  |||| |||| || |||| ||||||| | ||||||||||| | ||||  |||||||||||||||||||    
T  41408868 ttcaattgtctctttattctttgcatttgcgccgccattgatattactcactcacgtttctaatttcaattattgtttctatttcattcacgctagctat 41408967  T
Q  130 tgcatcattta 140  Q
    |||||| ||||    
T  41408968 tgcatcgttta 41408978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 31481325 - 31481427
Alignment:
Q  73 ttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattattt 172  Q
    ||||||||||||||  | ||||| ||||| ||||||  ||||||| | ||||||||||||||| || || |||||||||| ||| |||||| ||||||||    
T  31481325 ttgctcattcacgtctctaatttaaattattttttctatttcatttaggctagctattgcatcgttgagaaccttgagaactttggttttatgattattt 31481424  T
Q  173 aat 175  Q
    |||    
T  31481425 aat 31481427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 3293745 - 3293789
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcactaaattt 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  3293745 ggagccacacacaaggttgtgtgggctcctgcctgcacaaaattt 3293789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 10711719 - 10711675
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcactaaattt 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  10711719 ggagccacacacaaggttgtgtgggctcctgcctgcacaaaattt 10711675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 28641730 - 28641694
Alignment:
Q  203 gagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  28641730 gagccacacacaaggttgtgtgggctcctgcctgcac 28641694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 31481263 - 31481316
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattca 83  Q
    |||||||||| |||||||||||||||| ||| ||||| |||| ||| |||||||    
T  31481263 ttcaattgtctctttattctttgcatttacgctgccattgatattgttcattca 31481316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 202 - 351
Target Start/End: Original strand, 36924529 - 36924686
Alignment:
Q  202 ggagccacacacaaggttgtgtg----ggctcctgcctgcactaaatttacnnnnnnnntaat----taatactattgatagttttaatctaataataaa 293  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||         |||    |||||||||||||||||||||||||||||||||    
T  36924529 ggagccacacacaaggttgtgtgtgtgggctcctgcctgcactaaatttacaaaaaaataaataaaataatactattgatagttttaatctaataataaa 36924628  T
Q  294 tgatgataggtgctaatagatttaatctaataaaaaacgatgatagatgctaatgatg 351  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36924629 tgatgataggtgctaatagatttaatctaataaaaaatgatgatagatgctaatgatg 36924686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 21312056 - 21312019
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21312056 ggagccacacacaaggttgtgtgggctcctgcctgcac 21312019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 23572468 - 23572435
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcct 235  Q
    ||||||||||||||||||||||||||||||||||    
T  23572468 ggagccacacacaaggttgtgtgggctcctgcct 23572435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 41082301 - 41082264
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  41082301 ggagccacacacaaggttgagtgggctcctgcctgcac 41082264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 30088481 - 30088332
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctat 129  Q
    |||||||||| |||||||||||||||| ||| ||||| ||||  |||||||||||||| | ||||||||||| ||||||  ||||||| ||||| |||||    
T  30088481 ttcaattgtctctttattctttgcatttacgctgccattgat--tgctcattcacgtttctaatttcaattattttttctatttcatttacgctggctat 30088384  T
Q  130 tgcatcatttaggaccttgagaatttttgttttacgattatttaattccaat 181  Q
    |||||||||||| |||||||||| ||| |||||| |||||||||||||||||    
T  30088383 tgcatcatttagaaccttgagaactttagttttatgattatttaattccaat 30088332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 13801396 - 13801514
Alignment:
Q  73 ttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattattt 172  Q
    ||||||||||||||| | ||||| ||||| ||||||  ||| ||| ||||||||||||||||| ||||| |||||||||| |||  ||||| ||||||||    
T  13801396 ttgctcattcacgtttctaatttaaattattttttctatttaatttacgctagctattgcatcgtttagaaccttgagaactttgattttatgattattt 13801495  T
Q  173 aattccaatccttgttagt 191  Q
    ||||| |||  ||||||||    
T  13801496 aattcaaattattgttagt 13801514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 13801334 - 13801395
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgcca 91  Q
    |||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||| |||||    
T  13801334 ttcaattgtctctttattctttgcatttacgttgccattgatattgctcattcacgatgcca 13801395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 26647257 - 26647301
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcactaaattt 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  26647257 ggagccacacacaaggttgtgtgggctcctgcctgcacaaaattt 26647301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 33214272 - 33214390
Alignment:
Q  73 ttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattattt 172  Q
    ||||||||||||||| | ||||| ||||| ||||||  ||||||| ||| ||||||||||||| ||||| |||||||||| ||| |||||| ||||||||    
T  33214272 ttgctcattcacgtttctaatttaaattattttttctatttcatttacgttagctattgcatcgtttagaaccttgagaactttggttttatgattattt 33214371  T
Q  173 aattccaatccttgttagt 191  Q
    |||||||||  ||||||||    
T  33214372 aattccaattattgttagt 33214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 29834998 - 29834880
Alignment:
Q  73 ttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattattt 172  Q
    ||||||||||||||| | ||||| ||| | ||||||  ||||||| ||||||||||||||||| ||||| |||||||||| |||  ||||| ||||||||    
T  29834998 ttgctcattcacgtttctaatttaaataattttttctatttcatttacgctagctattgcatcgtttagaaccttgagaactttgattttatgattattt 29834899  T
Q  173 aattccaatccttgttagt 191  Q
    |||| ||||  ||||||||    
T  29834898 aatttcaattattgttagt 29834880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 43098335 - 43098413
Alignment:
Q  115 attcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattatttaattccaatccttgttagttt 193  Q
    ||||||| ||||||||||||||||||| |||||||||| | |||||||||| ||||||||||||||  ||| |||||||    
T  43098335 attcacgatagctattgcatcatttagaaccttgagaactcttgttttacgtttatttaattccaaatcttattagttt 43098413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 29835060 - 29834999
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgcca 91  Q
    |||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||| |||||    
T  29835060 ttcaattgtctctttattctttgcatttacgttgccattgatattgctcattcacgatgcca 29834999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 43098231 - 43098290
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgc 89  Q
    |||||||||| |||||||||||||||||| | ||||| ||   |||||||||||||||||    
T  43098231 ttcaattgtctctttattctttgcattcatgctgccattgtcattgctcattcacgttgc 43098290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 47035493 - 47035375
Alignment:
Q  73 ttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattattt 172  Q
    ||||||||||||||| | ||||| ||||| ||||||  ||||||| ||| ||||||||||||| ||||| |||||||||| ||| |||||| ||||||||    
T  47035493 ttgctcattcacgtttctaatttaaattattttttctatttcatttacgttagctattgcatcgtttagaaccttgagaactttggttttatgattattt 47035394  T
Q  173 aattccaatccttgttagt 191  Q
    |||||||||  ||||||||    
T  47035393 aattccaattattgttagt 47035375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 9949178 - 9949141
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9949178 ggagccacacacaaggttgtgtgggctcctgcctgcac 9949141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 31730893 - 31730930
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  31730893 ggagccacacacaaggttgtgtgagctcctgcctgcac 31730930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 41945800 - 41945770
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctg 232  Q
    |||||||||||||||||||||||||||||||    
T  41945800 ggagccacacacaaggttgtgtgggctcctg 41945770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 362288 - 362210
Alignment:
Q  115 attcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattatttaattccaatccttgttagttt 193  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||||  ||||||||||||||| |||||||||||    
T  362288 attcacgatagctattgcatcatttagaaccttgagaattattgttttacatttatttaattccaattcttgttagttt 362210  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 1068077 - 1068239
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgccaatttcaattagtttttccttttcattcacgctagctat 129  Q
    |||||||||  ||||||||||||||  |||| ||||| || | ||| ||||||||||| | |||| |||||| ||||||| |||||||||||||||||||    
T  1068077 ttcaattgttgctttattctttgca--cacgctgccattgctattgttcattcacgtttctaattgcaatta-tttttccatttcattcacgctagctat 1068173  T
Q  130 tgcatcatttaggaccttgagaatttttgttttacgattatttaattccaatccttgttagtttca 195  Q
    || ||  |  || |||| ||||| ||||||| ||||||| |||||||| |||  ||||||||||||    
T  1068174 tggatattagagaacctagagaacttttgttctacgattctttaattctaattattgttagtttca 1068239  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 14778892 - 14778826
Alignment:
Q  115 attcacgctagctattgcatcatttaggaccttgagaatttttgttttacgattatttaattccaat 181  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  14778892 attcacgatagctattgcatcatttagaaccttgagaatttttgttttatgtttatttaattccaat 14778826  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 14779406 - 14779347
Alignment:
Q  30 ttcaattgtccctttattctttgcattcacgttgccaatgatgttgctcattcacgttgc 89  Q
    |||||||||| |||||||||||||||||| | ||||| ||   |||||||||||||||||    
T  14779406 ttcaattgtctctttattctttgcattcatgctgccattgtcattgctcattcacgttgc 14779347  T

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Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 26329 - 26292
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26329 ggagccacacacaaggttgtgtgggctcctgcctgcac 26292  T

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Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 71725 - 71688
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  71725 ggagccacacacaaggttgtgtgggctcctgcctgcac 71688  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 99433 - 99396
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  99433 ggagccacacacaaggttgagtgggctcctgcctgcac 99396  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 564336 - 564299
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    |||||||||||||||||||||||||||| |||||||||    
T  564336 ggagccacacacaaggttgtgtgggctcgtgcctgcac 564299  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 53232870 - 53232833
Alignment:
Q  202 ggagccacacacaaggttgtgtgggctcctgcctgcac 239  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  53232870 ggagccacacacaagcttgtgtgggctcctgcctgcac 53232833  T

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