View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11235_low_8 (Length: 282)
Name: NF11235_low_8
Description: NF11235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11235_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 42961182 - 42960924
Alignment:
| Q |
8 |
aagcaaagggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactaggaaatgatagggagagtgaagtgattgtgtctagtggggcaat |
107 |
Q |
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| T |
42961182 |
aagcaatgggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactaggaaatgatagggagagtgaagtgattgtgtctagtggggcaat |
42961083 |
T |
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| Q |
108 |
tggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaacttgaaaatccctgtggtacttgacaacagatttgttgggaag |
207 |
Q |
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| T |
42961082 |
tggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaacttgaaaatccctgtggtacttgacaacagatttgttgggaag |
42960983 |
T |
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| Q |
208 |
ggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaaca |
266 |
Q |
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| T |
42960982 |
ggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaaca |
42960924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 5503529 - 5503759
Alignment:
| Q |
16 |
ggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactaggaaatgatagggagagtgaagtgattgtgtctagtggggcaattggaactc |
115 |
Q |
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| T |
5503529 |
ggggttattttcaatgatgaaaatgggaaacaacatgaggcaaggttgggaaatgatatgcaaagtgaagtgatattgtctagtggggcaattgggtctc |
5503628 |
T |
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| Q |
116 |
ctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaacttgaaaatccctgtggtacttgacaacagatttgttgggaagggtatggc |
215 |
Q |
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| T |
5503629 |
ctcaaatgctattgctaagtggaattggtcctaaagatgaacttcagaacttgaacatctcagtggtccttaacaatccttttgttgggaagggaatgat |
5503728 |
T |
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| Q |
216 |
tgataatccaatgaacacaatttttgttcct |
246 |
Q |
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| T |
5503729 |
agataatcctatgaacacagtttttgttcct |
5503759 |
T |
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