View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_high_12 (Length: 411)
Name: NF11236_high_12
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 40392511 - 40392126
Alignment:
| Q |
17 |
atttttaccctgcctaaaataacccgtcactcattcggactagcccgtttggcctgcataactaaaaactcaaatttagggtgagaaattgaatttctcc |
116 |
Q |
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| T |
40392511 |
atttttgccctgcctaaaataacccgtcactcattcggactagcccgtttggcctgcataactaaaaactcaaatttagggtgagaaattgaatttctcc |
40392412 |
T |
|
| Q |
117 |
cagaaattgaacttctgcataacaatgctaaaaactcaaacaagtaataacaataccaatgattcgatataactctagatgattcaagtcatatgctgaa |
216 |
Q |
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| T |
40392411 |
cagaaattgaacttctgcataacaatgctaaaaactcaaacaagtaataacaatgccaatgattcgatataactctagatgattcaagtcatatgctgaa |
40392312 |
T |
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| Q |
217 |
aaagttatgtagaaaatcctgcttactagcaatacaccatcattgctc-nnnnnnnngtatgaagtgatcgagatcgacattagacgctgccattgaaca |
315 |
Q |
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| T |
40392311 |
aaagttatgtagaaaatcctgcttactagcaatacacaatcattgctctttttttttgtatgaagtgatcgagatcgacattagactctgccattgaaca |
40392212 |
T |
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| Q |
316 |
aagacaacaatgtagatgcaaataaattaaaatatcttttgtgcttaataagcagaactagtaagcatcattatcccttagttcat |
401 |
Q |
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| T |
40392211 |
aagacaacaatgtagatgcaaataaattaaaatatcttttgtgcttaataagcagaactagtaagcatcattatcccttaattcat |
40392126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 330
Target Start/End: Complemental strand, 40380939 - 40380818
Alignment:
| Q |
206 |
catatgctgaaaaagttatgtagaaaatcctgcttactagcaatacaccatcattgctcnnnnnnnngtatgaagtgatcgagatcgacattagacgctg |
305 |
Q |
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| T |
40380939 |
catatgctgaaaaagttatttagaaaatccttcttgctagcaatacaccatcattgttctttttttcgtatgaag----cgagatcgacattagaatctg |
40380844 |
T |
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| Q |
306 |
cc-attgaacaaagacaacaatgtag |
330 |
Q |
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|| | ||||||||||||||||||||| |
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| T |
40380843 |
ccaaatgaacaaagacaacaatgtag |
40380818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 41051927 - 41051998
Alignment:
| Q |
153 |
caaacaagtaataacaataccaatgattcgatataactctagatgattcaagtcatatgctgaaaaagttat |
224 |
Q |
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| T |
41051927 |
caaagaagtaataacagcgccaatgatttgatagaactcgagatcattaaagtcatatgctgaaaaaattat |
41051998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 41052100 - 41052133
Alignment:
| Q |
310 |
tgaacaaagacaacaatgtagatgcaaataaatt |
343 |
Q |
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| T |
41052100 |
tgaacaaagacaacaatgtatatgcaaataaatt |
41052133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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