View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_high_13 (Length: 336)
Name: NF11236_high_13
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_high_13 |
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| [»] scaffold0537 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 88 - 319
Target Start/End: Complemental strand, 26137541 - 26137311
Alignment:
| Q |
88 |
gaatccacactttactcgatctttcccacttcaaccagttctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacag |
187 |
Q |
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| T |
26137541 |
gaatccacactttactcgatctttcccacttcaaccagttctaaatcaatgaccttgagagatttgatccaatttggggtgcaa-tcaaagcttcaacag |
26137443 |
T |
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| Q |
188 |
tagagatttaattaactaccaaacgagtaaaggactcaacctccagtactaaacgttgactagacagatacgttggatacaataataaccaatatatctc |
287 |
Q |
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| T |
26137442 |
tagagatttaattaactaccaaacgagtaaaggactcgacctccagtactaaacgttgacgagacagatacgttggatacaataataaccaatatatctc |
26137343 |
T |
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| Q |
288 |
aatctacgcggtaaacaatatgatatttgttt |
319 |
Q |
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| T |
26137342 |
aatctacgcggtaaacagtatgatatttgttt |
26137311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 27708481 - 27708643
Alignment:
| Q |
127 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
224 |
Q |
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| T |
27708481 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactgcgaaacgagtcaaggactc |
27708580 |
T |
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| Q |
225 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctc |
287 |
Q |
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| T |
27708581 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaatagacaatatatctc |
27708643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 10326 - 10164
Alignment:
| Q |
127 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
224 |
Q |
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| T |
10326 |
tctaaatcaatgaccttggtagatttggtccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactacgaaacgagtcaaagactc |
10227 |
T |
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| Q |
225 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctc |
287 |
Q |
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| T |
10226 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaataaacaatatatctc |
10164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 17384818 - 17384980
Alignment:
| Q |
127 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
224 |
Q |
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| T |
17384818 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagagggatttaatgaactgcgaaacgagtcaaggactc |
17384917 |
T |
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| Q |
225 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctc |
287 |
Q |
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| T |
17384918 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaatagacaatatatctc |
17384980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 5885465 - 5885350
Alignment:
| Q |
127 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
224 |
Q |
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| T |
5885465 |
tctaaatcaatgacattgggagatttgattcaattttgggtgcagatcaaagttttaacagtagagggatttaatgaactgcgaaacgtgtcaaggactc |
5885366 |
T |
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| Q |
225 |
aacctccagtactaaa |
240 |
Q |
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| T |
5885365 |
gacctccagtactaaa |
5885350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 51511257 - 51511322
Alignment:
| Q |
127 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtagag |
192 |
Q |
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| T |
51511257 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagag |
51511322 |
T |
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