View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11236_high_15 (Length: 325)

Name: NF11236_high_15
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11236_high_15
NF11236_high_15
[»] chr2 (1 HSPs)
chr2 (20-308)||(34613444-34613732)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 34613732 - 34613444
Alignment:
Q  20 tcatgtcttcagatgaagaatgttgttgtggttgagatatgatatcaatactatgagatgcagactctacacaagtaatgtaaaaagcttgagttccttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34613732 tcatgtcttcagatgaagaatgttgttgtggttgagatatgatatcaatactatgagatgcagactctgcacaagtaatgtaaaaagcttgagttccttt 34613633  T
Q  120 gcctgagtatgggaaataaggtggaaagccatgcttcttgtaacaagtttctatcatacgactaggccttcgattctaccctataaccaggccttcgaca 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34613632 gtctgagtatgggaaataaggtggaaagccatgcttcttgtaacaagtttctaccatacgactaggccttcgattctaccctataaccaggccttcgaca 34613533  T
Q  220 gaatgtgcagattttgcaggatcacggctgccgccacaaccgggattaccacggcctccaccagcagcagaatcaatcatagcagaaat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34613532 gaatgtgcagattttgcaggatcacggctgccgccacaaccgggattaccacggcctccaccagcagcagaatcaatcatagcagaaat 34613444  T

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