View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_high_3 (Length: 711)
Name: NF11236_high_3
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 704
Target Start/End: Original strand, 2791692 - 2792391
Alignment:
| Q |
17 |
gttacttgataagaagattactcaattttccaatcttttcatcgttttaggcgactgatgtctcctacatacttttggtggttg-----ttt-------- |
103 |
Q |
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| T |
2791692 |
gttacttgataagaagattactcaattttccaatctttccatcgttttaggcgactggtgtctcctacatacttttggtggttgctgattttgtcagtca |
2791791 |
T |
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| Q |
104 |
attagcatcttccaatttacaaacacacgcacatgcacgcacagaatatacctggtgggggtggaaggggagaggctgagattcttgannnnnnnnatat |
203 |
Q |
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| T |
2791792 |
attagcatcttccaatttacacacacac------------acagaatatacctag---gggtgaaaggggagaggctgagattcttgattttttt-atat |
2791875 |
T |
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| Q |
204 |
gaatgtttttactttctcttgcatggttgggttatgtatgtatatcaaaatcaaatacttccatggaatacttttgattgtgatacaaattttcagcatt |
303 |
Q |
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| T |
2791876 |
gaatgttt--actttctcttgcatggttggattatctat----atcaaaatcaaatacctccttggaatacttttgattatgatacaaattttcagcatt |
2791969 |
T |
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| Q |
304 |
tgcaaacggctaataagataagcacaataacatcctcgtctcctcttatttctttacttttggaaaacaaattgcaggagaatatgttggtcttacag-- |
401 |
Q |
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| T |
2791970 |
tgcaaacgtctaataagataagcacaataacatccccgtctcctcttttttctttccttttggaaaacaaattgcaggagaatatgttggtcttacaggt |
2792069 |
T |
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| Q |
402 |
-------------------aaatgcttgtttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgtgctttttctg |
482 |
Q |
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| T |
2792070 |
gctaggttggatggtgcagaaatgcttgcttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactagagttttgtgctttttctg |
2792169 |
T |
|
| Q |
483 |
ctgatttgcatctttggtaaacaaatactaacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagtatagttttgtgctttttctcctgaa |
582 |
Q |
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| T |
2792170 |
ctgatttgcatctttggtaaacaaatactaacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagtatagttttgtgctttttctcctgaa |
2792269 |
T |
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| Q |
583 |
tcaaactcttttttcatttgaacctaacggtgtaaaaaggtcattggtggttaaacttatgattagggagggaatagtgttctctatggtttatcatttt |
682 |
Q |
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| T |
2792270 |
tcaaactcttttttcatttgaacctaaaggggtaaaaaggtcattggtggttaaacttatgactagggagggaatagtgttctctatggtttatcatttt |
2792369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 558
Target Start/End: Original strand, 2782009 - 2782595
Alignment:
| Q |
17 |
gttacttgataagaagattactcaattttccaatcttttcatcgttttaggcgactgatgtctcctacatacttttggtggttgtttatta--------- |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||| |
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| T |
2782009 |
gttacttgataagaagattactcaattttccaatcttttcatcgtttttggcgactgatgtctcctgcatacttttggtggttgctgattatgtcagtca |
2782108 |
T |
|
| Q |
108 |
----gcatcttccaatttacaaacacacgcaca----------tgcacgcacagaatatacctggtgggggtggaaggggagaggctgagattcttgann |
193 |
Q |
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| T |
2782109 |
attagcatcttccaatttacaaacacacacacacacacccatgtgcacacacagaatatacctgg---gggtggaaggggattggctgagattcttgatt |
2782205 |
T |
|
| Q |
194 |
nnnnnnatatgaatgtttttactttctcttgcatggttgggttatgtatgtatatcaaaatcaaatacttccatggaatacttttgattgtgatacaaat |
293 |
Q |
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| T |
2782206 |
ttttc---atgattgttt--actttctcttgcatggttggattatg----tatatcaaaatcaaatacttccatggaatacttttgattatgatacaaat |
2782296 |
T |
|
| Q |
294 |
tttcagcatttgcaaacggctaataagataagcacaataacatcctcgtctcctcttatttctttacttttggaaaacaaattgcaggagaatatgttgg |
393 |
Q |
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| T |
2782297 |
tttcagcatttgcaaacgtctaataagataagcacaataacatccccgtctcctcttttttctttccttttggaaaacaaattgcaggagaatatgttgg |
2782396 |
T |
|
| Q |
394 |
tctta---------------------cagaaatgcttgtttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgt |
472 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2782397 |
tcttacaggtgctaggttggatggtgcagaaatgcttgcttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgt |
2782496 |
T |
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| Q |
473 |
gctttttctgctgatttgcatctttggtaaacaaatactaa-------cgagtcataagaagtgt------atgggaaatttagtgcagtttcgaagta |
558 |
Q |
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| T |
2782497 |
gctttttctgctgatttgcatctttggtaaacaaatactaactccagtcgagtcataagaagtgtacattcatgggaaatttagtgcagtttcgaagta |
2782595 |
T |
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