View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11236_high_7 (Length: 512)
Name: NF11236_high_7
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 9336150 - 9336255
Alignment:
| Q |
112 |
aagtagaaatcaagtattaaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9336150 |
aagtagaaatcaagtattaaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca |
9336249 |
T |
|
| Q |
212 |
acattc |
217 |
Q |
| |
|
|||||| |
|
|
| T |
9336250 |
acattc |
9336255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 229 - 450
Target Start/End: Original strand, 9336587 - 9336802
Alignment:
| Q |
229 |
agtctttttgaaaaattgacctacaaaattcaaaattcaaactccacccaaatcacatcactgtaaaacgcaaaaaccctaactggccaaaaacagaaac |
328 |
Q |
| |
|
||||||||||| ||| |||||||| | ||||||| ||| ||||||||||||||||| || ||| |||||||||||| || |||||||| ||||| |
|
|
| T |
9336587 |
agtctttttgagaaaatgacctaccagattcaaagttctaactccacccaaatcacc-----gttaaaagcaaaaaccctaccta-ccaaaaactgaaac |
9336680 |
T |
|
| Q |
329 |
actaaccgaattcaatgatgcgagggtccttaggatcggtgatggagttacagaaagaagccaaatcaatattcgcctcacttcccactttccagttcac |
428 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||| ||||||| ||| | ||||||| |
|
|
| T |
9336681 |
attaaccgaattcaaggatgcgagggtccttaggatcgatgatggatttacagatagaagccaaatcgatattcgcttcacttcgcacctcccagttcga |
9336780 |
T |
|
| Q |
429 |
atgaaaaagacgatcctcccat |
450 |
Q |
| |
|
||||||||||| ||||| |||| |
|
|
| T |
9336781 |
atgaaaaagactatccttccat |
9336802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 9335693 - 9335751
Alignment:
| Q |
20 |
caagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9335693 |
caagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa |
9335751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 459
Target Start/End: Original strand, 8209354 - 8209484
Alignment:
| Q |
329 |
actaaccgaattcaatgatgcgagggtccttaggatcggtgatggagttacagaaagaagccaaatcaatattcgcctcacttcccactttccagttcac |
428 |
Q |
| |
|
|||||||||||| | |||||||| || ||||||||||||||||||| | ||| |||||| ||||| ||||| || ||| ||| |||||||||||| |
|
|
| T |
8209354 |
actaaccgaattgacgaatgcgaggatcgttaggatcggtgatggagtgaaagagagaagctaaatcgatattggcgtcatttctgactttccagttctt |
8209453 |
T |
|
| Q |
429 |
atgaaaaagacgatcctcccatgtaagtttc |
459 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
8209454 |
gtgagaaagacgatcctcccatgcaagtttc |
8209484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 8209157 - 8209226
Alignment:
| Q |
130 |
aaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc |
199 |
Q |
| |
|
||||||| |||||||| | || |||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
8209157 |
aaattatgatcacctcgcagcgtcagcatctgcagcatgcaagtaagcaatcaatgcatcaagtgccttc |
8209226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 9937755 - 9937802
Alignment:
| Q |
152 |
tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9937755 |
tcagcatctgcatctcgcaagtaagcaatcaacgcatcgagtgccttc |
9937802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 9336026 - 9336056
Alignment:
| Q |
75 |
tcaaattcactcaaataaaaaatgttaaata |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9336026 |
tcaaattcactcaaataaaaaatgttaaata |
9336056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 327 - 459
Target Start/End: Original strand, 42365179 - 42365311
Alignment:
| Q |
327 |
acactaaccgaattcaatgatgcgagggtccttaggatcggtgatggagttacagaaagaagccaaatcaatattcgcctcacttcccactttccagttc |
426 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||| |||| ||||| |||||||| ||||||||| || ||| ||| |||||||||||| |
|
|
| T |
42365179 |
acactaaccgaattcacggatgcgagggtctttaggatcggtgattgagtcacagagagaagccagatcaatattggcttcatttcgcactttccagttt |
42365278 |
T |
|
| Q |
427 |
acatgaaaaagacgatcctcccatgtaagtttc |
459 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
42365279 |
ttgtgagaaagacgatcctcccatggaagtttc |
42365311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 42364910 - 42364974
Alignment:
| Q |
135 |
attatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc |
199 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42364910 |
attatcacctgctagcgtcagcatctgcagctcgcaagtaagcaatcaatgcatcaagtgccttc |
42364974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University