View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11236_high_9 (Length: 438)

Name: NF11236_high_9
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11236_high_9
NF11236_high_9
[»] chr1 (18 HSPs)
chr1 (18-149)||(22919993-22920124)
chr1 (157-259)||(15515534-15515636)
chr1 (194-316)||(4868430-4868551)
chr1 (179-301)||(32515374-32515496)
chr1 (155-303)||(15581245-15581393)
chr1 (243-305)||(27807194-27807256)
chr1 (156-256)||(39270403-39270503)
chr1 (160-215)||(15558213-15558268)
chr1 (156-215)||(33976678-33976737)
chr1 (155-305)||(46504147-46504297)
chr1 (226-315)||(23373232-23373321)
chr1 (262-315)||(24460320-24460373)
chr1 (164-305)||(27140478-27140619)
chr1 (156-265)||(37811844-37811953)
chr1 (164-303)||(4549472-4549612)
chr1 (276-316)||(6292604-6292644)
chr1 (229-305)||(16980868-16980944)
chr1 (277-313)||(29793619-29793655)
[»] chr8 (20 HSPs)
chr8 (260-423)||(8806517-8806675)
chr8 (18-243)||(8806759-8806969)
chr8 (156-305)||(12361184-12361335)
chr8 (156-256)||(26473730-26473830)
chr8 (203-315)||(43368619-43368731)
chr8 (189-315)||(27645929-27646055)
chr8 (240-305)||(2364389-2364454)
chr8 (171-256)||(7918424-7918509)
chr8 (272-313)||(30627872-30627913)
chr8 (155-304)||(37461133-37461281)
chr8 (245-300)||(8535989-8536044)
chr8 (173-256)||(14949875-14949958)
chr8 (133-166)||(2107443-2107476)
chr8 (156-197)||(34213566-34213607)
chr8 (164-305)||(39551138-39551279)
chr8 (164-233)||(39561542-39561611)
chr8 (155-303)||(11415145-11415293)
chr8 (156-236)||(11795084-11795164)
chr8 (252-316)||(14926900-14926964)
chr8 (275-315)||(38602438-38602478)
[»] chr4 (19 HSPs)
chr4 (155-303)||(2996564-2996712)
chr4 (178-304)||(27123282-27123408)
chr4 (156-302)||(30207503-30207649)
chr4 (156-256)||(27970050-27970150)
chr4 (156-255)||(23819081-23819180)
chr4 (156-241)||(11264293-11264378)
chr4 (160-256)||(46415770-46415866)
chr4 (275-314)||(15173223-15173262)
chr4 (157-244)||(50800020-50800106)
chr4 (164-299)||(56007679-56007814)
chr4 (158-200)||(2733315-2733357)
chr4 (226-316)||(6428080-6428170)
chr4 (171-305)||(33534098-33534232)
chr4 (189-315)||(53315351-53315477)
chr4 (163-315)||(7367973-7368126)
chr4 (232-301)||(18628486-18628555)
chr4 (109-166)||(19422314-19422371)
chr4 (191-315)||(6987660-6987784)
chr4 (275-315)||(27043749-27043789)
[»] chr2 (16 HSPs)
chr2 (156-305)||(9478291-9478440)
chr2 (171-315)||(15120190-15120334)
chr2 (159-255)||(28933819-28933914)
chr2 (156-250)||(10285852-10285946)
chr2 (171-305)||(32821816-32821950)
chr2 (227-315)||(18961953-18962044)
chr2 (173-244)||(34652026-34652097)
chr2 (226-304)||(43456637-43456715)
chr2 (222-315)||(7862818-7862909)
chr2 (157-250)||(33941902-33941995)
chr2 (171-256)||(43065428-43065513)
chr2 (192-305)||(43985237-43985350)
chr2 (152-256)||(1742010-1742114)
chr2 (191-243)||(1939323-1939375)
chr2 (223-315)||(13866937-13867029)
chr2 (240-304)||(17775396-17775460)
[»] chr7 (14 HSPs)
chr7 (164-299)||(39360023-39360158)
chr7 (164-299)||(39334193-39334328)
chr7 (197-303)||(33894660-33894766)
chr7 (239-305)||(44151405-44151471)
chr7 (159-236)||(5628565-5628641)
chr7 (191-316)||(22387814-22387939)
chr7 (246-302)||(25014031-25014087)
chr7 (189-244)||(12234879-12234934)
chr7 (157-215)||(3610759-3610817)
chr7 (229-315)||(23214920-23215006)
chr7 (193-250)||(28520996-28521053)
chr7 (202-303)||(36598287-36598388)
chr7 (227-303)||(8094369-8094445)
chr7 (275-315)||(19302482-19302522)
[»] chr5 (7 HSPs)
chr5 (171-302)||(37611147-37611278)
chr5 (171-302)||(37787877-37788008)
chr5 (156-258)||(14295498-14295600)
chr5 (232-305)||(8090004-8090077)
chr5 (277-315)||(17369316-17369354)
chr5 (233-315)||(31208541-31208623)
chr5 (230-315)||(37112197-37112281)
[»] chr6 (16 HSPs)
chr6 (178-304)||(2460081-2460207)
chr6 (156-315)||(281767-281926)
chr6 (163-257)||(5328972-5329066)
chr6 (156-302)||(32171459-32171605)
chr6 (156-256)||(1402988-1403088)
chr6 (184-256)||(1669776-1669848)
chr6 (160-236)||(25100039-25100115)
chr6 (155-302)||(8420129-8420276)
chr6 (277-316)||(13908353-13908392)
chr6 (156-206)||(12757546-12757596)
chr6 (156-250)||(30523652-30523745)
chr6 (191-244)||(9667975-9668028)
chr6 (156-197)||(14656282-14656323)
chr6 (157-250)||(30523930-30524023)
chr6 (164-236)||(2117403-2117475)
chr6 (275-315)||(35069531-35069571)
[»] chr3 (24 HSPs)
chr3 (156-316)||(36646300-36646460)
chr3 (229-303)||(22667468-22667542)
chr3 (229-303)||(22724107-22724181)
chr3 (275-315)||(34610725-34610765)
chr3 (171-303)||(37273141-37273273)
chr3 (155-302)||(41724202-41724350)
chr3 (171-302)||(31010409-31010540)
chr3 (163-302)||(31710819-31710958)
chr3 (163-302)||(31711074-31711213)
chr3 (163-256)||(54775126-54775219)
chr3 (191-279)||(2175804-2175892)
chr3 (169-249)||(30923883-30923963)
chr3 (155-255)||(43115047-43115147)
chr3 (156-267)||(14548688-14548799)
chr3 (156-250)||(48286794-48286888)
chr3 (238-304)||(50211809-50211875)
chr3 (191-256)||(21574517-21574582)
chr3 (226-303)||(24624272-24624349)
chr3 (163-256)||(51130749-51130842)
chr3 (191-251)||(2152161-2152221)
chr3 (130-166)||(16790205-16790241)
chr3 (191-315)||(20192525-20192649)
chr3 (173-305)||(26542546-26542677)
chr3 (159-235)||(40665424-40665500)
[»] scaffold0020 (1 HSPs)
scaffold0020 (156-236)||(159971-160051)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 22920124 - 22919993
Alignment:
Q  18 cttactatgtgagtagttttcccttttcaacatcattatgtggttttataagtaccatttgccttgttttgacattatacattatttgccttgttttgat 117  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||  |||| ||  ||||||||||||  |||||||||||||||||| ||| |||| ||    
T  22920124 cttactatgtgagtagttttcccatttcagcatcattatgtggttccataactattatttgccttgttccgacattatacattatttgtcttttttttat 22920025  T
Q  118 aatctgcataattaagcgcttatcatataagt 149  Q
     |||||||||||||||| ||||||||||||||    
T  22920024 catctgcataattaagcccttatcatataagt 22919993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 259
Target Start/End: Original strand, 15515534 - 15515636
Alignment:
Q  157 tataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    |||||| |||||| ||||||| |||| |||||| || ||||||| ||||| | ||||||  |||  || ||||||||||| |||||||||||||||||||    
T  15515534 tataagctataagttgttttcataagttatcatggatagcttatggaaataaattgaaaatagcgtattgacatgtcataagttgttttcataaactctc 15515633  T
Q  257 tcg 259  Q
    |||    
T  15515634 tcg 15515636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 316
Target Start/End: Original strand, 4868430 - 4868551
Alignment:
Q  194 agcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataag 293  Q
    |||||||  |||| |||||||| || || || ||||||||||| ||||||| ||||||||||||| | |||||| || ||| | ||||||| |||||||     
T  4868430 agcttatgtaaataagttgaaaacaacttattgacatgtcataagttgttt-cataaactctctcaaacagtctcacaagtgcctatgtcaatagataaa 4868528  T
Q  294 ttcaaataagtccatacaaacaa 316  Q
    ||||||||| || || |||||||    
T  4868529 ttcaaataaatcaatccaaacaa 4868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 32515496 - 32515374
Alignment:
Q  179 taagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtactt 278  Q
    |||| |||||| ||||||||||||| || |||||||| || || || ||||||||||| | ||||| ||||| ||||| | | |||||| || ||| |||    
T  32515496 taagctatcatggagagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgctt 32515397  T
Q  279 atgtcagtagataagttcaaata 301  Q
    |||| |||||||||  |||||||    
T  32515396 atgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 303
Target Start/End: Original strand, 15581245 - 15581393
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    |||||||| |||||| | ||||  |||| |||  ||||| ||||||||||||  | ||||| ||||| |||||||||||||| ||||||| ||| | |||    
T  15581245 tatataagctataagctttttttataaggtatgctagagggcttatagaaataggctgaaaacagcttatagacatgtcataagttgtttccattagctc 15581344  T
Q  255 tctcgaccagtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    |  | | || ||| || ||| |||||||||||||||||| | |||||||    
T  15581345 ttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataag 15581393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 27807194 - 27807256
Alignment:
Q  243 tttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    |||||||| ||||||| | ||||||||| | | |||||||||||||| |||||||||||||||    
T  27807194 tttcataagctctctcaaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtc 27807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 39270503 - 39270403
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||||| ||||||| |||| || |||||||||| |||  |||| |||||||| ||||| || |||||| || | | ||||||||||| ||||    
T  39270503 atataagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggacatgccaaaagctgttttcataagctct 39270404  T
Q  256 c 256  Q
    |    
T  39270403 c 39270403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 15558213 - 15558268
Alignment:
Q  160 aagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaa 215  Q
    |||||||||| ||||||| ||||||||| |||||| ||||||||||| || |||||    
T  15558213 aagttataagctgttttcataagatatcctagagaacttatagaaataagctgaaa 15558268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 33976678 - 33976737
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaa 215  Q
    |||||||||||||| ||||||| |||  |||| |||||||||||| ||||| ||||||||    
T  33976678 atataagttataagttgttttcttaacctatcctagagagcttatggaaataagttgaaa 33976737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 46504297 - 46504147
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    ||||||||||||||| ||||||  |||| |||| |  |||| ||||||||||| | |||||  | || |  ||||| ||| | ||||||||||||| |||    
T  46504297 tatataagttataagttgttttgataagttatcttgaagagtttatagaaattggctgaaaataacttacggacatatcaaaggttgttttcataagctc 46504198  T
Q  255 tctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    |  ||| |||||| || | |||||||| | ||||||||  |||||||||||    
T  46504197 taccgaacagtctcacaaatacttatgccggtagataaactcaaataagtc 46504147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 23373321 - 23373232
Alignment:
Q  226 gacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||| |||||||  |||| ||||| | | || ||| || ||| ||||| |||||||| ||||||||||||||| || ||||||    
T  23373321 gacatgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaaca 23373232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 24460373 - 24460320
Alignment:
Q  262 cagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    |||||| || ||| || ||||||||||||||||||||||||||| || ||||||    
T  24460373 cagtctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaaca 24460320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 27140478 - 27140619
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgacca 263  Q
    |||||| ||||||  |||| |||||| ||||||||||  |||| || ||||| || || || ||||||||||| | ||||| | ||||||||||| |  |    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaaga 27140577  T
Q  264 gtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    | ||||| | |  |||||||| |||||||| ||| |||||||    
T  27140578 gacttacaattgtttatgtcaatagataagctcatataagtc 27140619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 37811844 - 37811953
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    |||||| || |||| ||||||| ||||  ||||| ||||||| || ||||| |||||||| ||| | ||  |||||||||| | |||||||||||  |||    
T  37811844 atataaattgtaagctgttttcataagccatcatggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttct 37811943  T
Q  256 ctcgaccagt 265  Q
    ||| ||||||    
T  37811944 ctcaaccagt 37811953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 303
Target Start/End: Complemental strand, 4549612 - 4549472
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagcta-atagacatgtcatatgttgttttcataaactctctcgacc 262  Q
    |||||| ||||||| ||||  ||| | |||||||||| |||||| ||||||| || ||  |||||||||||||| |||||||  |||| ||||| | | |    
T  4549612 tataagatgttttcataagcaatcctggagagcttattgaaatttgttgaaaacaactttatagacatgtcataagttgtttctataagctctcccaaac 4549513  T
Q  263 agtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    ||||| |  | | |||||| ||||||||||  |||||||||    
T  4549512 agtctcagaaatgcttatgccagtagataatctcaaataag 4549472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 6292604 - 6292644
Alignment:
Q  276 cttatgtcagtagataagttcaaataagtccatacaaacaa 316  Q
    |||||||||||||||||| ||||||||||| || |||||||    
T  6292604 cttatgtcagtagataagctcaaataagtcaatccaaacaa 6292644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 16980868 - 16980944
Alignment:
Q  229 atgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    ||||| || ||||||| ||||| ||||||| |  ||||| || |||||||||||  ||| |||||||||||||||||    
T  16980868 atgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgttggtatataagttcaaataagtc 16980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 29793655 - 29793619
Alignment:
Q  277 ttatgtcagtagataagttcaaataagtccatacaaa 313  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  29793655 ttatgtcagtagataagctcaaataagtcaatacaaa 29793619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 423
Target Start/End: Complemental strand, 8806675 - 8806517
Alignment:
Q  260 accagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaacaatcattgacttcattcgacatgtatacaaaacaaaaccattaat 359  Q
    ||||||||||| |||  |||||||||||||||||| ||||||  || || |||||||||||||||||||||| |||||||||||     |||||||| ||    
T  8806675 accagtcttacaagtgtttatgtcagtagataagtacaaatacatcaatccaaacaatcattgacttcattcaacatgtataca-----aaaccattcat 8806581  T
Q  360 ttctaaactagagccagaaagtagtgaaaatgcaaataaaagtgtggtttctgttgtttcttct 423  Q
    || |||| |||||||||||||| |||||| ||||||||||||  ||| |||| |||||||||||    
T  8806580 ttataaagtagagccagaaagttgtgaaactgcaaataaaagcatggcttctcttgtttcttct 8806517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 8806969 - 8806759
Alignment:
Q  18 cttactatgtgagtagttttcccttttcaacatcattatgtggttttataagtaccatttgccttgttttgacattatacattatttgccttgttttgat 117  Q
    |||| |||||||||||||||  |||||||||||| ||||||||||  | |||||  ||||||||||||||||||||||| ||||||||||| |||||||     
T  8806969 cttattatgtgagtagtttttacttttcaacatctttatgtggttacacaagtattatttgccttgttttgacattataaattatttgcctagttttga- 8806871  T
Q  118 aatctgcataattaagcgcttatcatataagttcttatatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagc 217  Q
                 |||| |||||||||||||| |||||  ||  |||||| | |||||||||||  ||||  ||||||||||||||| | |||| || ||    
T  8806870 ------------aaagcacttatcatataagtgcttatgcatgggttatatgttgttttcgtaaactatc--agagagcttatagaagtaagttaaatgc 8806785  T
Q  218 agctaatagacatgtcatatgttgtt 243  Q
    |||| |||||||||||||| ||||||    
T  8806784 agcttatagacatgtcataagttgtt 8806759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 12361184 - 12361335
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaa--ct 253  Q
    ||||||| |||||| ||||||| |||| |||    ||||||| || ||||| |||||||| ||||| || ||||||||||| | | |||  ||||   ||    
T  12361184 atataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggacatgtcataagctatttctataagatct 12361283  T
Q  254 ctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    ||||| |  ||||| || ||||||||| ||||||||||||||||||||||||    
T  12361284 ctctcaaagagtctaacaagtacttatatcagtagataagttcaaataagtc 12361335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 26473830 - 26473730
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    |||| |||| |||| ||||||| |||| |||| ||||||||||||  |||| |||| |||  |||| |||||||||||||| | ||||||||||| ||||    
T  26473830 atatgagttgtaagttgttttcataagctatcctagagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctct 26473731  T
Q  256 c 256  Q
    |    
T  26473730 c 26473730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 43368731 - 43368619
Alignment:
Q  203 aaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
    |||| ||||||||  |||||||  |||||||||| ||||||||||||| || |  | |||||||| || | | ||||||| |||||||||| ||||||||    
T  43368731 aaataagttgaaaatagctaatgaacatgtcataagttgttttcataagctgttacaaccagtctcacaaatgcttatgttagtagataagatcaaataa 43368632  T
Q  303 gtccatacaaaca 315  Q
    ||| || ||||||    
T  43368631 gtcaatccaaaca 43368619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 27645929 - 27646055
Alignment:
Q  189 tagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtag 288  Q
    |||||||||||||||||| ||||||||  |||| ||||| |||||||| ||||| | ||||| ||||||| | | ||||||| | | ||| || || |||    
T  27645929 tagagagcttatagaaataagttgaaaatagcttatagatatgtcataagttgtatgcataagctctctcaaacggtcttacaaatgcttttgccaatag 27646028  T
Q  289 ataagttcaaataagtccatacaaaca 315  Q
     |||||| ||||| ||| || ||||||    
T  27646029 gtaagtttaaatacgtcaatccaaaca 27646055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 2364454 - 2364389
Alignment:
Q  240 tgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    ||||||||||| ||||  | | |||||| || |||||||||||||| |||||||||||||||||||    
T  2364454 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagttcaaataagtc 2364389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 7918509 - 7918424
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    |||||||||||| |||| | |||||||||| ||||| ||||| || ||||| ||  ||||||| || ||||||||||||| |||||    
T  7918509 tgttttcgtaagctatcttggagagcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctc 7918424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 30627913 - 30627872
Alignment:
Q  272 agtacttatgtcagtagataagttcaaataagtccatacaaa 313  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  30627913 agtacttatgtcagtagataagttgaaataagtcaatacaaa 30627872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 304
Target Start/End: Original strand, 37461133 - 37461281
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    |||||||| |||| | ||||||| |||| |||||  || | |||||| |||| |||||||| | ||  | | |||||||||| ||| ||| |||||||||    
T  37461133 tatataagctatatgttgttttcataagctatcacggataacttataaaaataagttgaaatcggcctacaaacatgtcataagttatttccataaactc 37461232  T
Q  255 tctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagt 304  Q
    ||||   ||||||| | |||  ||| ||||||||||||||||||||||||    
T  37461233 tctcatacagtcttgctagtgttta-gtcagtagataagttcaaataagt 37461281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 8536044 - 8535989
Alignment:
Q  245 tcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaat 300  Q
    |||||||||||| | | |||||| || ||||||||||||||||||||| |||||||    
T  8536044 tcataaactctcccaaacagtctcacaagtacttatgtcagtagataaattcaaat 8535989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 14949875 - 14949958
Alignment:
Q  173 ttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    ||||| |||| |||| || |||| |||||||||| || ||||| ||||| || ||||||||||| ||| ||||||||| |||||    
T  14949875 ttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctc 14949958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 2107476 - 2107443
Alignment:
Q  133 gcgcttatcatataagttcttatatataagttat 166  Q
    ||||||||||||||||||||||| ||||||||||    
T  2107476 gcgcttatcatataagttcttatgtataagttat 2107443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 34213607 - 34213566
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagct 197  Q
    ||||||||||| || |||||||||||| ||||||||||||||    
T  34213607 atataagttatgagttgttttcgtaagttatcatagagagct 34213566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 305
Target Start/End: Complemental strand, 39551279 - 39551138
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgacca 263  Q
    |||||| ||||||| |||| | || | ||||||||||| |||| |||| ||| |||||  | ||||||||||| ||||||| |||||| |||| | | ||    
T  39551279 tataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataaattctcccaaaca 39551180  T
Q  264 gtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    || | || | | ||||| || ||||||||  |||||||||||    
T  39551179 gtttcacaaatgcttatatccgtagataatctcaaataagtc 39551138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 39561611 - 39561542
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtc 233  Q
    |||||| |||||||||||| ||||||  | ||||||| ||||| || ||||| ||||||| |||||||||    
T  39561611 tataagttgttttcgtaagctatcatgaaaagcttatggaaataagctgaaaacagctaacagacatgtc 39561542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 303
Target Start/End: Original strand, 11415145 - 11415293
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    ||||||||||||| | ||||||| |||| |||| ||||||| || |  |||| || ||| |  |||| || ||||||| ||| | ||||| |||||||||    
T  11415145 tatataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagctgtttccataaactc 11415244  T
Q  255 tctcgaccagtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    |||  | || ||| || ||||||||||| |||| |||||  ||||||||    
T  11415245 tctaaaacaatctcacaagtacttatgttagtaaataagcacaaataag 11415293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 11795084 - 11795164
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcata 236  Q
    |||||||||||||| || |||| |||| ||| || |||||||||| ||||| || ||||| ||| | || |||||||||||    
T  11795084 atataagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggttatggacatgtcata 11795164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 14926964 - 14926900
Alignment:
Q  252 ctctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaacaa 316  Q
    ||||||| | |||||| || ||| |||||| ||||| ||||||||||||||||| || |||||||    
T  14926964 ctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaacaa 14926900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 38602438 - 38602478
Alignment:
Q  275 acttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||||||||||| ||||||||||| || ||||||    
T  38602438 acttatgtcagtagataagctcaaataagtcaatccaaaca 38602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 303
Target Start/End: Original strand, 2996564 - 2996712
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    ||||||||||||||| ||||||| |||| |||| | |||||| |||  |||| ||||||||  |||| || ||||||||||| ||||||||||||| |||    
T  2996564 tatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctc 2996663  T
Q  255 tctcgaccagtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    |||| | |||||| |  ||| ||||||||| || |||||||||||||||    
T  2996664 tctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataag 2996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 304
Target Start/End: Complemental strand, 27123408 - 27123282
Alignment:
Q  178 gtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtact 277  Q
    ||||| ||| || |||||||||| ||||| |||||||| || || | |||||||||||| ||||||| ||||| ||||||| | |||||| || ||||||    
T  27123408 gtaagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtact 27123309  T
Q  278 tatgtcagtagataagttcaaataagt 304  Q
    ||||  |||  ||||| ||||||||||    
T  27123308 tatgctagtttataagctcaaataagt 27123282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 302
Target Start/End: Complemental strand, 30207649 - 30207503
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||||| ||||||| |||| || | ||||||| |||| ||||| || ||||| ||||| | |||||||||||||| |||| | |||| ||||    
T  30207649 atataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagcttacagacatgtcatatgctgttcttataagctct 30207550  T
Q  256 ctcgaccagtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
    ||||| |||||| || |||  ||||| | ||||||||  ||||||||    
T  30207549 ctcgatcagtctcacaagtggttatgcctgtagataaaatcaaataa 30207503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 27970050 - 27970150
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttataga-aattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    |||||||||||||  ||||||| |||| | |||| |||||||||| || || || | |||| ||||| |||||||||||||| |||||||||||||||||    
T  27970050 atataagttataacttgttttcataagctgtcatggagagcttatggataagtact-gaaaacagcttatagacatgtcataagttgttttcataaactc 27970148  T
Q  255 tc 256  Q
    ||    
T  27970149 tc 27970150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 23819081 - 23819180
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    |||||||||||||  ||||||| |||| |||| |  ||||||||||||||| || ||||| || || || ||||||||||| | ||||||| ||||||||    
T  23819081 atataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactct 23819180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 11264293 - 11264378
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttg 241  Q
    ||||| |||||||| ||||||| ||||  ||| |||||||||||| ||||| |||||||| ||| | || ||||||||||| ||||    
T  11264293 atatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttg 11264378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 46415866 - 46415770
Alignment:
Q  160 aagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    |||||||||| | ||||| |||| |||| | |||||||||   ||||||| ||||| || || || ||||||||||| ||||||| |||||||||||    
T  46415866 aagttataagttcttttcataagctatcctcgagagcttagtaaaattagctgaaaacaacttatggacatgtcataggttgtttgcataaactctc 46415770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 15173262 - 15173223
Alignment:
Q  275 acttatgtcagtagataagttcaaataagtccatacaaac 314  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  15173262 acttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 50800106 - 50800020
Alignment:
Q  157 tataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttt 244  Q
    |||||| |||||| ||||||| |||| |||||| |||| ||| | ||||| || ||||| ||||| |||||||||||||| |||||||    
T  50800106 tataagctataagctgttttcttaagctatcatggagaactt-tggaaataagctgaaaacagcttatagacatgtcataagttgttt 50800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 56007679 - 56007814
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgacca 263  Q
    |||||| ||||||  |||| |||| | |||||||||||||||| |||| |||  ||  ||| ||||||||||| |||  ||  || | ||||||| | ||    
T  56007679 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaatagacaatcgacatgtcataagttacttgtattagctctctcaaaca 56007778  T
Q  264 gtcttacgagtacttatgtcagtagataagttcaaa 299  Q
    ||||||| |||  ||||| |||||||||||||||||    
T  56007779 gtcttacaagtgattatgccagtagataagttcaaa 56007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 2733315 - 2733357
Alignment:
Q  158 ataagttataaggtgttttcgtaagatatcatagagagcttat 200  Q
    ||||||||| || ||||||| ||||||||||||||||||||||    
T  2733315 ataagttattagttgttttcataagatatcatagagagcttat 2733357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 6428080 - 6428170
Alignment:
Q  226 gacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaacaa 316  Q
    ||||||||||| ||||||||||||| ||||||| | | |||| || ||| |||||  || || ||||| ||||||||||| || |||||||    
T  6428080 gacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtcaattcaaacaa 6428170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 33534232 - 33534098
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttac 270  Q
    |||||||||||  |||  | ||||||||||  |||| || ||||| || || || || |||||| |  |||||||||||| ||||||| |  | ||| ||    
T  33534232 tgttttcgtaaattatttttgagagcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcac 33534133  T
Q  271 gagtacttatgtcagtagataagttcaaataagtc 305  Q
     ||||||||||||| |||||||| |||||||||||    
T  33534132 aagtacttatgtcactagataagctcaaataagtc 33534098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 53315351 - 53315477
Alignment:
Q  189 tagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtag 288  Q
    ||||||||||||  |||| |||| |||  |||| || ||||||| ||||||||||||||||| ||||| | |  |||||||   || |||||  |||| |    
T  53315351 tagagagcttatgaaaataagttaaaaatagcttatggacatgtgatatgttgttttcataagctctcacaaatagtcttatatgtgcttataccagtgg 53315450  T
Q  289 ataagttcaaataagtccatacaaaca 315  Q
    ||||| ||||||||||| || ||||||    
T  53315451 ataagctcaaataagtcaatccaaaca 53315477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 7368126 - 7367973
Alignment:
Q  163 ttataaggtgttttcgtaagatatcatagagagcttatagaaatta-gttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgac 261  Q
    ||||||| ||||| | |||| |||  ||||||||||| | ||| || ||||||||||||| ||| |||||||||| | ||||||||| | ||||| | |     
T  7368126 ttataagttgtttccataagctattctagagagcttacaaaaaatatgttgaaagcagcttataaacatgtcataagctgttttcatgagctctcccaaa 7368027  T
Q  262 cagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    |||||| || ||   ||||| | ||||||||  ||||||||||| || ||||||    
T  7368026 cagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaaca 7367973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 18628555 - 18628486
Alignment:
Q  232 tcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaata 301  Q
    ||||| ||||||||||||| ||||| | | |||||| || |||  ||||||||||||||||| |||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 19422314 - 19422371
Alignment:
Q  109 tgttttgataatctgcataattaagcgcttatcatataagttcttatatataagttat 166  Q
    ||||| ||||| | || |||||||||||||||||||||| | ||||| ||||||||||    
T  19422314 tgtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttat 19422371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 6987784 - 6987660
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagat 290  Q
    |||||||||| ||||| ||||||||  || | || ||||||||||| ||||| | ||||| ||||| | | |||||| || |  |||||||  |||||||    
T  6987784 gagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgtatccataagctctcccaaacagtctcacaaacacttatgctagtagat 6987685  T
Q  291 aagttcaaataagtccatacaaaca 315  Q
    ||  |||| |||||| |||||||||    
T  6987684 aaactcaattaagtcaatacaaaca 6987660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 27043789 - 27043749
Alignment:
Q  275 acttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||||||||||| ||||||||||| || ||||||    
T  27043789 acttatgtcagtagataagctcaaataagtcaatccaaaca 27043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 9478291 - 9478440
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||| | ||| |||||||| |||| | ||||| | || ||| | || ||||| ||||| || ||||||| ||| ||||||| ||||||||||    
T  9478291 atataagctatatgctgtgttcgtaagctatcgtggagagttgatggaagtaagatgaaaacagcttatggacatgtaataagttgtttgcataaactct 9478390  T
Q  256 ctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    ||| | |||||  || |||||||||||  |||||||||||||||||||||    
T  9478391 ctcaaacagtcacacaagtacttatgttggtagataagttcaaataagtc 9478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 315
Target Start/End: Original strand, 15120190 - 15120334
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttac 270  Q
    |||||||||||| |||||| ||||||||||  |||| || | ||| ||||||||  |||||||||| ||||||| ||||| ||||| | | |||  | ||    
T  15120190 tgttttcgtaagctatcatggagagcttatcaaaataagcttaaaacagctaatgaacatgtcataagttgtttccataagctctcccaaacagattcac 15120289  T
Q  271 gagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
     | |  |||||  |||||||||||||||||||||| || ||||||    
T  15120290 aactgtttatgctagtagataagttcaaataagtcaatccaaaca 15120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 28933819 - 28933914
Alignment:
Q  159 taagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||||||  ||||||| |||| |||| ||||||||| |||||||| |||||||| ||||||  | ||||| |||| ||||||||||||| ||||    
T  28933819 taagttataaattgttttcataagctatcctagagagctgatagaaataagttgaaaacagctatga-acatgccataagttgttttcataagctct 28933914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 10285852 - 10285946
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataa 250  Q
    ||||||| ||||||  |||| | |||| || |||||||| ||||| ||||| |||||||| ||||| || ||||||||||| ||| |||||||||    
T  10285852 atataagctataagtcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataa 10285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 305
Target Start/End: Original strand, 32821816 - 32821950
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttac 270  Q
    ||||||| |||| |||| || ||||||||||||||| |  ||||| ||||| || ||||||||||| |||||||  |||||||||  | | ||||||| |    
T  32821816 tgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaacagtcttgc 32821915  T
Q  271 gagtacttatgtcagtagataagttcaaataagtc 305  Q
     | | |||| ||  ||||||||| |||||||||||    
T  32821916 aaatgcttacgttggtagataagctcaaataagtc 32821950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 18962044 - 18961953
Alignment:
Q  227 acatgtcatatgttgttttcataaactctctcgaccagtcttacgagt---acttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    |||||||||||| ||||||||||| ||||| ||| ||| |||||||||    |||||| || |||||| ||||||||||||| || ||||||    
T  18962044 acatgtcatatgctgttttcataagctctcccgaacagccttacgagtttagcttatgacaatagataggttcaaataagtcaatccaaaca 18961953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 34652097 - 34652026
Alignment:
Q  173 ttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttt 244  Q
    ||||| |||| |||| | |||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 34652026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 43456715 - 43456637
Alignment:
Q  226 gacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagt 304  Q
    ||||||||||  |||||||||| || |||| || | ||||||||| |||  |||||| |||| ||||||||||||||||    
T  43456715 gacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataagttcaaataagt 43456637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 7862818 - 7862909
Alignment:
Q  222 aatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||| ||| ||||||||| ||| ||||||||| |||||| |  |||  ||| |||||||||||| |||||||||||| || ||||||    
T  7862818 aatagacatgttataagttgttttcgtaagctctctcgaacagtctca-aagtgtttacgtcagtagataa-ttcaaataagtcaatccaaaca 7862909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 33941902 - 33941995
Alignment:
Q  157 tataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataa 250  Q
    ||||||||||||  ||||||| |||| |||| | ||||| ||||   ||| |||||||||||||| ||  || ||||||| |||||||||||||    
T  33941902 tataagttataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataa 33941995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 43065513 - 43065428
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    ||||||| |||| |||| | |||||||||| ||||| || ||||| ||  | || ||||||||||| ||||||||||||| |||||    
T  43065513 tgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 43985237 - 43985350
Alignment:
Q  192 agagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagata 291  Q
    ||||||||| ||||  ||||||||  |||| || ||||||||||| |||||||   ||| ||||||| | |||| |||| |||  |||||||||||||||    
T  43985237 agagcttatggaaacaagttgaaaaaagcttatggacatgtcataagttgtttcagtaatctctctcaaacagttttacaagtgtttatgtcagtagata 43985336  T
Q  292 agttcaaataagtc 305  Q
    |  | |||||||||    
T  43985337 aacttaaataagtc 43985350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 1742114 - 1742010
Alignment:
Q  152 ttatatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaa 251  Q
    ||||||||||| |||||| ||||||| |||  ||||||  |||| |||| ||||| |||||||   |||| ||  |||||||||| ||||||| |||||     
T  1742114 ttatatataagatataagctgttttcataatctatcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataag 1742015  T
Q  252 ctctc 256  Q
    |||||    
T  1742014 ctctc 1742010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 1939375 - 1939323
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgtt 243  Q
    |||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||    
T  1939375 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 13866937 - 13867029
Alignment:
Q  223 atagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    |||| ||||||||| ||||||||| |||  |||||| | |||||| || |||  ||||| ||||||||||| ||||||| ||| || ||||||    
T  13866937 ataggcatgtcataggttgttttcttaagttctctcaaacagtctcacaagtgtttatggcagtagataagctcaaataggtcaatccaaaca 13867029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 17775460 - 17775396
Alignment:
Q  240 tgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagt 304  Q
    ||||||||||||| ||||| | ||||||||  ||  |||||||||||||||| | ||||||||||    
T  17775460 tgttttcataaaccctctcaaacagtcttaaaagagcttatgtcagtagatatgctcaaataagt 17775396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 39360023 - 39360158
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgacca 263  Q
    |||||| |||||||  ||| |||| | | |||||||| ||||| || |||||||| || || || |||||||| ||||||| |||||||||| || | ||    
T  39360023 tataagatgttttcaaaagctatcctggcgagcttattgaaataagctgaaagcaacttatggatatgtcataagttgtttccataaactctatcaaaca 39360122  T
Q  264 gtcttacgagtacttatgtcagtagataagttcaaa 299  Q
    |||| ||||||| ||||  |||||||||||||||||    
T  39360123 gtctcacgagtaattattccagtagataagttcaaa 39360158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 39334193 - 39334328
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgacca 263  Q
    |||||| |||||||  ||| |||| | | |||||||| ||||| || |||| ||| || || |||||||||||  |||||| ||||||||||  | | ||    
T  39334193 tataagctgttttcaaaagctatcctggcgagcttatggaaataagctgaatgcaacttatggacatgtcataaattgtttccataaactctaccaaaca 39334292  T
Q  264 gtcttacgagtacttatgtcagtagataagttcaaa 299  Q
    |||| ||||||| ||||  |||||||||||||||||    
T  39334293 gtctcacgagtaattattccagtagataagttcaaa 39334328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 33894660 - 33894766
Alignment:
Q  197 ttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttc 296  Q
    |||| ||||| || ||||| || || || ||||||||||||| ||||||||||| ||||| | | |||||| || ||| ||||||||| | |||||| ||    
T  33894660 ttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctc 33894759  T
Q  297 aaataag 303  Q
    |||||||    
T  33894760 aaataag 33894766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 44151471 - 44151405
Alignment:
Q  239 ttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    |||||||||||| ||||||| |  | ||| || |||||||||||||||| |||||||||||||||||    
T  44151471 ttgttttcataagctctctcaaataatctcacaagtacttatgtcagtatataagttcaaataagtc 44151405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 5628641 - 5628565
Alignment:
Q  159 taagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcata 236  Q
    |||| |||||| ||||||| |||||||||| |||||||||||  |||| || ||||| ||||| ||||||||||||||    
T  5628641 taagatataagctgttttcataagatatcacagagagcttatgaaaataagctgaaa-cagcttatagacatgtcata 5628565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 316
Target Start/End: Complemental strand, 22387939 - 22387814
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagat 290  Q
    |||||||||| ||||| |||| ||| ||| | ||| ||||| |||| ||||||||||||| ||||| | | |||||| ||  ||  ||||||||||| ||    
T  22387939 gagagcttatggaaataagttaaaaacagtttataaacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaat 22387840  T
Q  291 aagttcaaataagtccatacaaacaa 316  Q
    |||||| | |||||| || |||||||    
T  22387839 aagttctagtaagtcaatccaaacaa 22387814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 25014031 - 25014087
Alignment:
Q  246 cataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
    ||||||||||||| | ||||||||| ||| ||| ||||||||||||| |||||||||    
T  25014031 cataaactctctcaaacagtcttacaagtgcttgtgtcagtagataaattcaaataa 25014087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 12234934 - 12234879
Alignment:
Q  189 tagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttt 244  Q
    |||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||    
T  12234934 tagagagcttatggaaataagctgaaaacagcttatagacatgtcataagttgttt 12234879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 3610817 - 3610759
Alignment:
Q  157 tataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaa 215  Q
    |||||| |||||| |||||||||||  |||| |||||||||||||||||| || |||||    
T  3610817 tataagctataagttgttttcgtaaactatcctagagagcttatagaaataagctgaaa 3610759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 23214920 - 23215006
Alignment:
Q  229 atgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    |||||||| |||||||||||||| |||||| | |||||| |  |||  |||||  |||||||||| ||||||||||| || ||||||    
T  23214920 atgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 28521053 - 28520996
Alignment:
Q  193 gagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataa 250  Q
    |||||||| |||| ||| ||||| ||||| |||||||||||||| ||||||| |||||    
T  28521053 gagcttatggaaaatagctgaaaacagcttatagacatgtcataagttgtttccataa 28520996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 36598388 - 36598287
Alignment:
Q  202 gaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaata 301  Q
    ||||| || ||||| ||||| ||  |||||||||| | ||||| ||||| ||||||| | || ||| || | | ||||||||||||| ||||||||||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaata 36598289  T
Q  302 ag 303  Q
    ||    
T  36598288 ag 36598287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 8094369 - 8094445
Alignment:
Q  227 acatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    |||||||||| | |||||||||||| |||||| |  ||||| || ||| ||||||  |||||||||| |||||||||    
T  8094369 acatgtcataagctgttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 19302522 - 19302482
Alignment:
Q  275 acttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||||||||||| ||||||||||| || ||||||    
T  19302522 acttatgtcagtagataagctcaaataagtcaattcaaaca 19302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 37611278 - 37611147
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttac 270  Q
    ||||||| |||| |||| | |||||||||| ||||| |  ||||| ||||| ||  |||||||| | ||||||||||||| ||||||| | || ||| ||    
T  37611278 tgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcac 37611179  T
Q  271 gagtacttatgtcagtagataagttcaaataa 302  Q
     ||||||| || ||||||||||||||||||||    
T  37611178 aagtacttgtgccagtagataagttcaaataa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 37788008 - 37787877
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttac 270  Q
    ||||||| |||| |||| | |||||||||| ||||| |  ||||| ||||| ||  |||||||| | ||||||||||||| ||||||| | || ||| ||    
T  37788008 tgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcac 37787909  T
Q  271 gagtacttatgtcagtagataagttcaaataa 302  Q
     ||||||| || ||||||||||||||||||||    
T  37787908 aagtacttgtgccagtagataagttcaaataa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 14295498 - 14295600
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||||| |||||||||||| |||| | |||||||| ||||| | || ||||| ||||| || ||||| ||||| | ||||||||||| ||||    
T  14295498 atataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaacagcttatcgacatatcataagctgttttcataagctct 14295597  T
Q  256 ctc 258  Q
    |||    
T  14295598 ctc 14295600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 8090004 - 8090077
Alignment:
Q  232 tcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtc 305  Q
    ||||| ||||||||||||| ||||||| |  |||||  ||||| ||| ||| ||||||||||||||||||||||    
T  8090004 tcataagttgttttcataagctctctcaaatagtctcgcgagtgcttgtgttagtagataagttcaaataagtc 8090077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 17369316 - 17369354
Alignment:
Q  277 ttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  17369316 ttatgtcagtagataagttcaaataagtcaatccaaaca 17369354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 31208541 - 31208623
Alignment:
Q  233 catatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    |||| |||||||| || ||||||| | | |||||| ||| || ||||||||||||| | |||||||||||||| || ||||||    
T  31208541 cataagttgtttttatgaactctcccaaacagtctcacgggtgcttatgtcagtagttcagttcaaataagtcaatccaaaca 31208623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 37112281 - 37112197
Alignment:
Q  230 tgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||| |||||||||||||| |||| | | |||||| |||| || |||||||||| || ||| ||||||||||| || ||||||    
T  37112281 tgtcataggttgttttcataaattctccctaacagtctcacgaata-ttatgtcagtggaaaagctcaaataagtcgattcaaaca 37112197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 304
Target Start/End: Complemental strand, 2460207 - 2460081
Alignment:
Q  178 gtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtact 277  Q
    ||||| ||| || |||||||||| ||||| |||||||| || || | |||||||||||| ||||||| ||||| ||||||| | |||||| || ||||||    
T  2460207 gtaagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtact 2460108  T
Q  278 tatgtcagtagataagttcaaataagt 304  Q
    ||||  |||  ||||| ||||||||||    
T  2460107 tatgctagtttataagctcaaataagt 2460081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 315
Target Start/End: Complemental strand, 281926 - 281767
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||||| ||| ||| |||| |||| ||||||||| || ||||| || ||||| || || |||||||||||||| |||| || ||| | ||||    
T  281926 atataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctct 281827  T
Q  256 ctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    | | | |||||| || ||||||||||||| || ||||  |||| |||||| || ||||||    
T  281826 cccaaacagtctcacaagtacttatgtcactacataatctcaagtaagtcaatccaaaca 281767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 5328972 - 5329066
Alignment:
Q  163 ttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctct 257  Q
    ||||||| |||||||||||| |||||| ||||| ||||  |||| || ||||||||||| || |||||  |||| ||| ||| ||||||||||||    
T  5328972 ttataagctgttttcgtaagttatcatggagagtttatgaaaataagatgaaagcagcttatggacataacataagttatttccataaactctct 5329066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 32171459 - 32171605
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||||  |||||| ||||| |||| | |||||||||| ||||| || ||||| ||| | || ||  | ||||| ||||||| | ||| ||||    
T  32171459 atataagctataatctgttttagtaaggtatcctggagagcttatggaaataagctgaaaacagttcatggaggtatcataagttgtttccttaagctct 32171558  T
Q  256 ctcgaccagtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
    | | |||||||| || | | |||||||||||| ||||||||||||||    
T  32171559 cccaaccagtctcacaaatgcttatgtcagtaaataagttcaaataa 32171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 1402988 - 1403088
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||||  ||||||| |||| |||||| |||| |||||||||||||| ||||   || | ||||| |||||||| |||||||  |||||||||    
T  1402988 atataagctataaattgttttcataagctatcatggagatcttatagaaattagctgaatatagtttatagatatgtcataagttgtttcgataaactct 1403087  T
Q  256 c 256  Q
    |    
T  1403088 c 1403088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 1669848 - 1669776
Alignment:
Q  184 tatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    |||| ||||| |||| | ||||| || ||||| ||||| |||||||||||||| ||||||||||||| |||||    
T  1669848 tatcctagagggcttgtcgaaatgagctgaaaacagcttatagacatgtcataagttgttttcataagctctc 1669776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 25100039 - 25100115
Alignment:
Q  160 aagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcata 236  Q
    |||||||||| ||||||| |||| |||| || ||||||||||||||| ||||||||  ||| |||  ||||||||||    
T  25100039 aagttataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaatagcaaatgaacatgtcata 25100115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 8420276 - 8420129
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    |||||||  |||||| |||| ||||||| ||| || |||||||||| ||||| ||||||||  ||||  | ||||||||||| | | |||  |||| |||    
T  8420276 tatataaaatataagctgttctcgtaagctataatggagagcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctc 8420177  T
Q  255 tctcgaccagtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
    || | | |||||| || |||  |||||||| |||||||| ||||||||    
T  8420176 tcactaacagtctcacaagtgtttatgtcaatagataagctcaaataa 8420129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 13908353 - 13908392
Alignment:
Q  277 ttatgtcagtagataagttcaaataagtccatacaaacaa 316  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  13908353 ttatgtcagtagataagttcaaataagtcaattcaaacaa 13908392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 12757546 - 12757596
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaat 206  Q
    ||||||||||| || |||||||||||| |||||||||||||| ||| ||||    
T  12757546 atataagttatgagttgttttcgtaagttatcatagagagctaataaaaat 12757596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 30523652 - 30523745
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataa 250  Q
    ||||||| |||||| | ||||| |||| |||| | ||||| ||||||||||||||||||| ||||| ||  ||||| |||| ||||||| |||||    
T  30523652 atataagctataagtt-ttttcataagctatccttgagaggttatagaaattagttgaaaacagcttatgaacatggcataagttgtttccataa 30523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 9668028 - 9667975
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttt 244  Q
    |||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||    
T  9668028 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 9667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 14656323 - 14656282
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagct 197  Q
    ||||||||||| || |||||||||||| ||||||||||||||    
T  14656323 atataagttatgagttgttttcgtaagttatcatagagagct 14656282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 30523930 - 30524023
Alignment:
Q  157 tataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataa 250  Q
    |||||| |||| ||| | ||| |||| |||| || ||||||||| ||||| || | |||||| ||||| |||||||||||  ||||||||||||    
T  30523930 tataagctatatggtatattcataagctatcctaaagagcttatggaaataagctaaaagcaactaatggacatgtcataatttgttttcataa 30524023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 2117403 - 2117475
Alignment:
Q  164 tataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcata 236  Q
    |||||| ||||||| |||| |||| |||||||||||| ||||| || | ||| ||||| ||||||||| ||||    
T  2117403 tataagttgttttcataagttatcctagagagcttattgaaataagctaaaaacagcttatagacatgccata 2117475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 35069571 - 35069531
Alignment:
Q  275 acttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||||||||||| ||||||||| | |||||||||    
T  35069571 acttatgtcagtagataagctcaaataagccaatacaaaca 35069531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 36646460 - 36646300
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    |||||||||||||  ||||||| |||| |||| ||||||| |||||||||| || ||||| ||||| || |||||| |||| || |||| ||||| ||||    
T  36646460 atataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctct 36646361  T
Q  256 ctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagtccatacaaacaa 316  Q
    | | |  |||||||| ||| | |||| || |||||| | | ||||||||| || |||||||    
T  36646360 cccaaatagtcttacaagtgcctatgccaatagatatgcttaaataagtcgatccaaacaa 36646300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 22667468 - 22667542
Alignment:
Q  229 atgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    |||| ||||| ||||| ||||||||||||| | |||||| || ||| |||||||||||||||||| |||||||||    
T  22667468 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 22724107 - 22724181
Alignment:
Q  229 atgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    |||| ||||| ||||| ||||||||||||| | |||||| || ||| |||||||||||||||||| |||||||||    
T  22724107 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 34610765 - 34610725
Alignment:
Q  275 acttatgtcagtagataagttcaaataagtccatacaaaca 315  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  34610765 acttatgtcagtagataagctcaaataagtccatacaaaca 34610725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 37273141 - 37273273
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttac 270  Q
    ||||||| |||| |||| | |||| ||||| ||||| |||||||| || || || ||||||||||| ||||||| ||||| ||||| | | |||||| ||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcac 37273240  T
Q  271 gagtacttatgtcagtagataagttcaaataag 303  Q
     ||| ||||||  | || |||||||||||||||    
T  37273241 cagtgcttatgctaataaataagttcaaataag 37273273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 302
Target Start/End: Original strand, 41724202 - 41724350
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaatta-gttgaaagcagctaatagacatgtcatatgttgttttcataaact 253  Q
    |||||||| |||||  ||||||| | || |||| | ||||||||||| ||| || | ||||| || || || ||||||||||| ||||||| |||||  |    
T  41724202 tatataagctataaactgttttcatcagctatccttgagagcttatataaaataagctgaaaacaacttatggacatgtcataagttgtttccataagtt 41724301  T
Q  254 ctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
     || | | | |||| || |||||||||||||||||||||||||||||||    
T  41724302 ttcacaaactgtctgacaagtacttatgtcagtagataagttcaaataa 41724350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 31010409 - 31010540
Alignment:
Q  171 tgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttac 270  Q
    |||||||||||  ||||||||||||||||| ||| | || ||||| ||||| || ||||||||||| |||||||  |||| || || | | ||  || ||    
T  31010409 tgttttcgtaacctatcatagagagcttatggaattaagctgaaaacagcttatggacatgtcataagttgtttctataagctttcacaaacacactcac 31010508  T
Q  271 gagtacttatgtcagtagataagttcaaataa 302  Q
     ||| ||||||| ||||| |||||||||||||    
T  31010509 aagttcttatgttagtagttaagttcaaataa 31010540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 302
Target Start/End: Complemental strand, 31710958 - 31710819
Alignment:
Q  163 ttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgacc 262  Q
    ||||||| ||||||| |||  |||| |||||||||| | ||| | || ||||| ||||| || | ||||||||| |||||||| |||| || || | | |    
T  31710958 ttataagctgttttcttaacctatcttagagagcttttggaattaagctgaaaacagctcatgggcatgtcataagttgtttttataagctttcacaaac 31710859  T
Q  263 agtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
    || || || ||| |||||||| ||||||||||||||||||    
T  31710858 agactcacaagttcttatgtcggtagataagttcaaataa 31710819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 302
Target Start/End: Complemental strand, 31711213 - 31711074
Alignment:
Q  163 ttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgacc 262  Q
    ||||||| ||||||| |||  |||| |||||||||| | ||| | || ||||| ||||| || | ||||||||| |||||||| |||| || || | | |    
T  31711213 ttataagctgttttcttaacctatcttagagagcttttggaattaagctgaaaacagctcatgggcatgtcataagttgtttttataagctttcacaaac 31711114  T
Q  263 agtcttacgagtacttatgtcagtagataagttcaaataa 302  Q
    || || || ||| |||||||| ||||||||||||||||||    
T  31711113 agactcacaagttcttatgtcggtagataagttcaaataa 31711074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 54775126 - 54775219
Alignment:
Q  163 ttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    ||||||| |||||||||||| |||||| ||||| ||||  |||| || ||||||||||| || |||||  |||| ||| ||| |||||||||||    
T  54775126 ttataagctgttttcgtaagttatcatggagagtttatgaaaataagatgaaagcagcttatggacataacataagttatttccataaactctc 54775219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 2175892 - 2175804
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtactta 279  Q
    ||||| |||||||||  |||||||| ||||| | | |||||||||| |||||||||||||||| |||| |  |||||||| ||| ||||    
T  2175892 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 2175804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 30923963 - 30923883
Alignment:
Q  169 ggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcata 249  Q
    ||||||||| |||  |||| ||||||| |||||||||| || ||||| ||||| |||||||||||||| | ||||| ||||    
T  30923963 ggtgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 43115047 - 43115147
Alignment:
Q  155 tatataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactc 254  Q
    |||||||| |||||| ||||||| | |  |||||| |||||||||| ||||| || ||||| ||  | || ||||||||||| ||||||| |||||||||    
T  43115047 tatataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactc 43115146  T
Q  255 t 255  Q
    |    
T  43115147 t 43115147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 14548799 - 14548688
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactct 255  Q
    ||||||| |||||| ||||||| |||| |||  | |||||||||| ||||| || ||||| ||||  ||  | |||||||| ||||||||||||| ||||    
T  14548799 atataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctct 14548700  T
Q  256 ctcgaccagtct 267  Q
    ||| | ||||||    
T  14548699 ctcaaacagtct 14548688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 48286888 - 48286794
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataa 250  Q
    |||||||||||||  ||||||| |||| ||||||  ||||||||||||||| || ||| | | | | || |||||||| || |||||||||||||    
T  48286888 atataagttataaactgttttcataagttatcatgtagagcttatagaaataagctgataacggtttatggacatgtcgtaggttgttttcataa 48286794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 50211809 - 50211875
Alignment:
Q  238 gttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataagt 304  Q
    |||||||||||||  |||||| | ||||||||| ||| ||||||| |||||||||| | ||||||||    
T  50211809 gttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagt 50211875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 21574517 - 21574582
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    |||||||||| ||||| || | ||||||||| ||  |||||||||| ||||||||||||| |||||    
T  21574517 gagagcttatggaaataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctc 21574582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 24624272 - 24624349
Alignment:
Q  226 gacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagataagttcaaataag 303  Q
    ||||||||||| | ||||||||||| ||||  | | ||||||||| ||| || |||| ||||||||||||||| ||||    
T  24624272 gacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaactaag 24624349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 51130749 - 51130842
Alignment:
Q  163 ttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctc 256  Q
    ||||||||||||||| |||| |||||| |||||||  |  |||| || |||||||| || || |||||||||||  | |||||||||| |||||    
T  51130749 ttataaggtgttttcataagctatcatggagagctattgaaaataagctgaaagcaacttatggacatgtcatacatggttttcataagctctc 51130842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 2152221 - 2152161
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaa 251  Q
    |||||||||||||||  |||||||| ||||| |   |||||||||| ||||||||||||||    
T  2152221 gagagcttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttttcataaa 2152161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 16790241 - 16790205
Alignment:
Q  130 taagcgcttatcatataagttcttatatataagttat 166  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  16790241 taagcgtttatcatataagtgcttatatataagttat 16790205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 20192649 - 20192525
Alignment:
Q  191 gagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacgagtacttatgtcagtagat 290  Q
    |||||||||| ||||| |||||||| ||||| || ||||||||||| | |||||  |||| |||||||   |||| | |  ||| ||||||||| |||||    
T  20192649 gagagcttatggaaatgagttgaaaacagcttatggacatgtcataagctgtttctataagctctctcatacagtgtaagaagtgcttatgtcaatagat 20192550  T
Q  291 aagttcaaataagtccatacaaaca 315  Q
    || || |||| |||| || ||||||    
T  20192549 aaattgaaattagtcaatccaaaca 20192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 26542546 - 26542677
Alignment:
Q  173 ttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcatatgttgttttcataaactctctcgaccagtcttacga 272  Q
    ||||| |||| ||| || ||||| |||| ||||| |||||||| ||  | |||||||| ||||| |||||||   ||| ||||  | | ||||||||| |    
T  26542546 ttttcataagctattatggagagtttatggaaataagttgaaaacaagttatagacatatcataagttgtttcagtaagctcttccaaacagtcttacaa 26542645  T
Q  273 gtacttatgtcagtagataagttcaaataagtc 305  Q
    |||||||||| |||||||||  |||||||||||    
T  26542646 gtacttatgtgagtagataa-atcaaataagtc 26542677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 40665424 - 40665500
Alignment:
Q  159 taagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcat 235  Q
    ||||||||||| ||||||| |||| |||| | ||||||||||| |||| || ||||| ||||| ||  |||||||||    
T  40665424 taagttataagatgttttcataagttatcttggagagcttataaaaataagctgaaaacagcttatgaacatgtcat 40665500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 160051 - 159971
Alignment:
Q  156 atataagttataaggtgttttcgtaagatatcatagagagcttatagaaattagttgaaagcagctaatagacatgtcata 236  Q
    |||||||||||||| ||||||| |||| |||| || ||||||| | ||||| || ||||| | ||| ||||||||||||||    
T  160051 atataagttataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcata 159971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University