View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_low_12 (Length: 425)
Name: NF11236_low_12
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_12 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0311 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 31821914 - 31822319
Alignment:
| Q |
17 |
caaagggcaacacatcgtgaacacatcaagaaagatgcaaaagtctattcttgattcaccaatgtgtgaattcaaatatctttgataggataatattgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31821914 |
caaagggcaacacatcgtgaacacatcaagaaagatgcaaaagtctattcttgattcaccaatgtgtgaattcaaatatctttgataggataat--tgaa |
31822011 |
T |
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| Q |
117 |
gatgagacaacaaagggtgcatgagatacactcaagaaaggtgtatggtggagacgaaataatctcaagaagatatggctttaagctttgagaagacaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31822012 |
gatgagacaacaaagggtgcatgagatacactcaagaaaggtgtatggtggagacaaaataatctcaagaagatatggctttaagctttgagaagacaat |
31822111 |
T |
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| Q |
217 |
atgagatgattcaaatgaatgaagctgaatcatatgcataaattcttattaagattggagatgctaactaattagccaaatgaaggatttggtgaatgtt |
316 |
Q |
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|||||||||| || ||||||||||||||||||| ||||||| ||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31822112 |
atgagatgatccagatgaatgaagctgaatcatttgcataa-ttcttctcaagattggtgatgctaactaattagccaaatgaaggatatggtgaatgtt |
31822210 |
T |
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| Q |
317 |
gagtttctgagaatttggagaattagagccaaaagaaccataagggtttgattgagaaaaggaatcatagaaaaacattttgatcaaaagatagaaaatg |
416 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31822211 |
gagtttatgagaatttggagaattagagccaaaagagccataatggtttgattgagaaaagaaatcatagaaaaacattttgatcaaaagatagaaaatg |
31822310 |
T |
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| Q |
417 |
agtacatac |
425 |
Q |
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||||||||| |
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| T |
31822311 |
agtacatac |
31822319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 7165696 - 7165664
Alignment:
| Q |
393 |
attttgatcaaaagatagaaaatgagtacatac |
425 |
Q |
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| T |
7165696 |
attttgatcaaaagatagaaaatgagtacatac |
7165664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 27737994 - 27737882
Alignment:
| Q |
313 |
tgttgagtttctgagaatttggagaattagagccaaaagaaccataagggtttgattgagaaaaggaatcatagaaaaacattttgatcaaaagatagaa |
412 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27737994 |
tgttgagtttttgagaatttggagaattagagccaatagagccataaggctttgattgagaaaaggaatcgtagaaaaacattttgatcaaaagatagaa |
27737895 |
T |
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| Q |
413 |
aatgagtacatac |
425 |
Q |
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||||||||||||| |
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| T |
27737894 |
aatgagtacatac |
27737882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 36472648 - 36472553
Alignment:
| Q |
330 |
tttggagaattagagccaaaagaaccataagggtttgattgagaaaaggaatcatagaaaaacattttgatcaaaagatagaaaatgagtacatac |
425 |
Q |
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|||||||||||| |||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36472648 |
tttggagaattaaagccaaaagagccgtaaggctttgattgacaaaaggaatcatagaaaaacattttgatcaaaagatggaaaatgagtacatac |
36472553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 1744747 - 1744636
Alignment:
| Q |
22 |
ggcaacacatcgtgaacacatcaagaaagatgc-aaaagtctattcttgattcaccaatgtgtgaattcaaatatctttgataggataatattgaagatg |
120 |
Q |
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||||||||||| |||||||| || ||||||| ||||||||||||||||||| ||||||| | |||| ||||||||||| | ||| | ||||||| | |
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| T |
1744747 |
ggcaacacatcatgaacacaaaaacaaagatgagaaaagtctattcttgattcctcaatgtgcgtattcgaatatctttgagaagat--tgttgaagagg |
1744650 |
T |
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| Q |
121 |
agacaacaaagggt |
134 |
Q |
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| T |
1744649 |
atacaacaaagggt |
1744636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 13609 - 13512
Alignment:
| Q |
327 |
gaatttggagaattagagccaaaa-gaaccataagggtttgattgagaaaaggaatcatagaaaaacattttgatcaaaagatagaaaatgagtacatac |
425 |
Q |
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||||| ||||||||||| ||||| || ||| |||| ||||||||||||||| || | ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
13609 |
gaattcggagaattagaaacaaaaagagccaaaaggctttgattgagaaaag--attacagagaaatattttgatcaaaagatagaaaatgagtacatac |
13512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 425
Target Start/End: Complemental strand, 15190 - 15091
Alignment:
| Q |
324 |
tgagaatttggagaattagagccaaaa-gaaccataagggtttgattgagaaaaggaatcatagaaaaacattttgatcaaaagatagaaaatgagtaca |
422 |
Q |
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|||||||| ||||||||||| ||||| || ||| |||| ||||||||| ||||| || | ||| ||| |||||||||||||||||||||||||||||| |
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| T |
15190 |
tgagaattcggagaattagaaacaaaaagagccaaaaggctttgattga-aaaag--attacagagaaatattttgatcaaaagatagaaaatgagtaca |
15094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 23577793 - 23577878
Alignment:
| Q |
17 |
caaagggcaacacatcgtgaacacatcaagaaagat-gcaaaagtctattcttgattcaccaatgtgtgaattcaaatatctttga |
101 |
Q |
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|||| ||||||||||| |||||||| ||||||||| | ||| |||||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
23577793 |
caaatggcaacacatcatgaacacaagaagaaagattggaaaggtctattcttgattcatcaatgtgtggatttgaatatctttga |
23577878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 30372093 - 30372021
Alignment:
| Q |
324 |
tgagaatttggagaattagagccaaaagaaccataagggtttgattgagaaaaggaatcatagaaaaacattt |
396 |
Q |
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||||||||| ||||||| || ||||||| |||||||| ||||||||||||||||| ||| | | |||||||| |
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| T |
30372093 |
tgagaatttagagaattggaaacaaaagagccataaggctttgattgagaaaaggattcacatagaaacattt |
30372021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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