View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11236_low_16 (Length: 325)

Name: NF11236_low_16
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11236_low_16
NF11236_low_16
[»] chr2 (1 HSPs)
chr2 (20-308)||(34613444-34613732)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 34613732 - 34613444
Alignment:
Q  20 tcatgtcttcagatgaagaatgttgttgtggttgagatatgatatcaatactatgagatgcagactctacacaagtaatgtaaaaagcttgagttccttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34613732 tcatgtcttcagatgaagaatgttgttgtggttgagatatgatatcaatactatgagatgcagactctgcacaagtaatgtaaaaagcttgagttccttt 34613633  T
Q  120 gcctgagtatgggaaataaggtggaaagccatgcttcttgtaacaagtttctatcatacgactaggccttcgattctaccctataaccaggccttcgaca 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34613632 gtctgagtatgggaaataaggtggaaagccatgcttcttgtaacaagtttctaccatacgactaggccttcgattctaccctataaccaggccttcgaca 34613533  T
Q  220 gaatgtgcagattttgcaggatcacggctgccgccacaaccgggattaccacggcctccaccagcagcagaatcaatcatagcagaaat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34613532 gaatgtgcagattttgcaggatcacggctgccgccacaaccgggattaccacggcctccaccagcagcagaatcaatcatagcagaaat 34613444  T

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