View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_low_17 (Length: 295)
Name: NF11236_low_17
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 3826545 - 3826822
Alignment:
| Q |
1 |
agacgagatccaaacgtggccaaacatagtaccctaccattctaataatgacaacactttggtcagtagcatctaatcaaattatatatggtacactatc |
100 |
Q |
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| T |
3826545 |
agacgagatccaaacgtggccaaacatagtaccctaccattctaataatgacaacactttggtcagtagcatctaatcaaattatatatggtac-ctatc |
3826643 |
T |
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| Q |
101 |
taacttttctaaaagtagacaaataacgacaaccaatattataacttataagataagcannnnnnnnnnnnnnnncatgggaatgagtatttcctgttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3826644 |
taacttttctaaaagtagacaaataacgacaaccaatattataacttataagataagcattttttcttttcttttcatgggaatgagtatttcctgttat |
3826743 |
T |
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| Q |
201 |
tgagtttggaacagtgatggagaacaaccctagttcatccagagttgacagaaaattcgttgaaaggaatagaagaaat |
279 |
Q |
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| T |
3826744 |
tgagtttggaacagtgatggagaacaaccctagttcatccagagttgacagaaaattcgttgaaaggaatagaagaaat |
3826822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 6819212 - 6819296
Alignment:
| Q |
3 |
acgagatccaaacgtggccaaacatagtaccctaccattctaataatgacaacactttggtcagtagcatctaatcaaattatat |
87 |
Q |
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| T |
6819212 |
acgagatccagacgtggccaaacatagtgccttaccattctaataatcacacttctttggtcagtagcatctaatcaaattatat |
6819296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 6819347 - 6819417
Alignment:
| Q |
188 |
tatttcctgttattgagtttggaacagtgatggagaacaaccctagttcatccagagttgacagaaaattc |
258 |
Q |
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| T |
6819347 |
tatttcctgtgattgaggttggaaccgtgatggagaataaccctagttcatccagaattgacagaaaattc |
6819417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 6819421 - 6819490
Alignment:
| Q |
210 |
aacagtgatggagaacaaccctagttcatccagagttgacagaaaattcgttgaaaggaatagaagaaat |
279 |
Q |
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|||||||||| |||| ||||| | |||||||||| ||||| | |||||| |||||||||||||||||||| |
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| T |
6819421 |
aacagtgatgaagaataacccgaattcatccagaattgactggaaattcattgaaaggaatagaagaaat |
6819490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 33839045 - 33838981
Alignment:
| Q |
215 |
tgatggagaacaaccctagttcatccagagttgacagaaaattcgttgaaaggaatagaagaaat |
279 |
Q |
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| T |
33839045 |
tgatggagaataactctagttcatccagaattgacagaaaattcattgaaaggaatagaagaaat |
33838981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 33839124 - 33839054
Alignment:
| Q |
188 |
tatttcctgttattgagtttggaacagtgatggagaacaaccctagttcatccagagttgacagaaaattc |
258 |
Q |
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||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||| |||| | ||||||| |
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| T |
33839124 |
tatttcctgttatcgaggttggaacagtgatggagaataaccctagttcatctagaattgatataaaattc |
33839054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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