View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11236_low_2 (Length: 749)
Name: NF11236_low_2
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 254 - 739
Target Start/End: Original strand, 7752912 - 7753399
Alignment:
| Q |
254 |
cgccgaactcttccacaatctcttgaaaactcctttctcctccaccctccaccccatctc--ctcgctaaggacaataccctccaacctcttataggccg |
351 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||| | | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7752912 |
cgccgaactcttccacaacctcttgaaaactcctttctcctccaccctcggctccaccccacctcgctaaggacaataccctccaacctcttataggccg |
7753011 |
T |
|
| Q |
352 |
agctcaccataaaaataccggactcatctaacttccacctccatttatcctctaaattagaaaatctagctccctccaaatcctccttgaggcttaaaag |
451 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||| |
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|
| T |
7753012 |
agctcaccgtaaaaataccggactcatctaacttccacctccatttatcctct----tagacaatctagctccctccaaatcttcctcaaggcttaaaag |
7753107 |
T |
|
| Q |
452 |
caccccctctttccacatgagaagatgtcttctccaagtaaaatttcactccgagccaaactccgacacccaacccatctctcctacctttgcctccttt |
551 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
7753108 |
cacctcctcttcccacatgaaaagatgtcttctccaagtaaaatttcactccgagccaaactccgacacccaacccacctctcctaccttagcctccttt |
7753207 |
T |
|
| Q |
552 |
tggtccgaaatagaatagagcctcggatacctacttctaaaactactatctcctctcca----tcaccccaaaaactagagttgagaccattaccaactg |
647 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7753208 |
tggtccgaaatagaatagagcctcagatacctacttctaaaactactatctcctctccatatgtcaccccaaaaactagagttgagaccattaccaactt |
7753307 |
T |
|
| Q |
648 |
gtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggtccttccaccaaatagaagcccatctctgctcc |
739 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
7753308 |
gtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggcccttccaccaaatagaagcccatctcggctcc |
7753399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 739
Target Start/End: Original strand, 40386097 - 40386819
Alignment:
| Q |
18 |
acaaaaagattaggatgagaaataaagaagtgattaagccacctcatcaacttaagccaaacctcacacgcaacatcacaatgaagaaataggtgacacg |
117 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| | || |||||||||||||||||||||||||||| |||||||||||||||| | |||| ||| | |
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| T |
40386097 |
acaaaaagattaggcggagaaataaaaaagtgactgagtcacctcatcaacttaagccaaacctcactagcaacatcacaatgaacagatagatgaagca |
40386196 |
T |
|
| Q |
118 |
cggattcttcttccctattacacaacccacacaaaggattcatctccggccctagtacatttctcaatgcgagattgactttggttggaactcgattaag |
217 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||| |||| |||||||| ||| |||| ||||||| ||| ||| | |||||||||||||| ||||| |
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|
| T |
40386197 |
catactcttcttccctattacacaacccacacaaagggttcacctccggccttagaacatctctcaatatgaggttggccttggttggaactcggttaag |
40386296 |
T |
|
| Q |
218 |
aatagctctccaagcaaaagccactacttttgatgtcgccgaactcttccacaatctcttgaaaactcctttctcctccaccctccaccccatctcctcg |
317 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| || || || ||||||||| ||||||||||||||||||||||| |||||||| |||| ||| | |
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| T |
40386297 |
aatggctctccaagcaaaagccactacctttgaaaacgacggacacttccacaacctcttgaaaactcctttctcctcaaccctccatcccacctcat-- |
40386394 |
T |
|
| Q |
318 |
ctaaggacaataccctccaacctcttataggccgagctcaccataaaaataccggactcatctaacttccacctccatttatcctctaaattagaaaatc |
417 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||||||| |||||| ||||| || || ||||||||||||||||| ||||||| |||||| || | |
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|
| T |
40386395 |
-taaggatactaccttccaacctcttataggccgagctcaccgaaaaaattccggaatcttccaacttccacctccatttgtcctctagattagacaacc |
40386493 |
T |
|
| Q |
418 |
tagctccctccaaatcctccttgaggcttaaaagcaccccctctttccacatgagaagatgtcttctccaagtaaaatttcactccgagccaaactccga |
517 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||| |||| || ||||||| |||||||||||| |
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|
| T |
40386494 |
ttactccaaccaaatcctccttgaggcttaaaagcacctcctcttcccacatgaaaagatgtctcctccaaataaagttccactccgtgccaaactccga |
40386593 |
T |
|
| Q |
518 |
cacccaacccatctctcctacctttgcctccttttggtccgaaatagaatagagcctcggatacctacttctaaaactactatctcctctcca----tca |
613 |
Q |
| |
|
|||| |||||| |||||| ||||| ||||||||||| ||||| |||||||| |||||| |||| ||| ||||| || |||||||||||||| ||| |
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|
| T |
40386594 |
caccaaacccacctctcccaccttagcctccttttgatccgagatagaataaagcctcatatacaaactcctaaagcttctatctcctctccaattgtca |
40386693 |
T |
|
| Q |
614 |
ccccaaaaactagagttgagaccattaccaactggtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggtccttcc |
713 |
Q |
| |
|
| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
40386694 |
caccaaaaactagagttgagtccattaccaacttgtcgctccaaccccgaattaaaccaattaagctccccaaaatcaccaagcttagttagttccttcc |
40386793 |
T |
|
| Q |
714 |
accaaatagaagcccatctctgctcc |
739 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
40386794 |
accaaatagaagcccatctcggctcc |
40386819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 26447248 - 26447465
Alignment:
| Q |
18 |
acaaaaagattaggatgagaaataaagaagtgattaagccacctcatcaacttaagccaaacctcacacgcaacatcacaatgaagaaataggtgacacg |
117 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||| | ||||| ||||||||||||||||||| ||| ||||| |||||||||||||| |||||| | |
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|
| T |
26447248 |
acaaaaaggttaggaggagaaataaaagagtgatttaaccaccgcatcaacttaagccaaaccgcactagcaacttcacaatgaagaaaaaggtgaagca |
26447347 |
T |
|
| Q |
118 |
cggattcttcttccctattacacaacccacacaaaggattcatctccggccctagtacatttctcaatgcgagattgactttggttggaactcgattaag |
217 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| |||| ||| ||||| || || |||||||| || || || ||||||||||||| | ||||| |
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|
| T |
26447348 |
cggattcttccatcctagtacacaacccacacaaagggttcacctctggcccaagaacgtttctcaaagcaaggttagctttggttggaacatggttaag |
26447447 |
T |
|
| Q |
218 |
aatagctctccaagcaaa |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26447448 |
gatagctctccaagcaaa |
26447465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 432 - 725
Target Start/End: Complemental strand, 49456284 - 49455987
Alignment:
| Q |
432 |
tcctccttgaggcttaaaagcaccccctctttccacatgagaagatgtcttctccaagtaaaatttcactccgagccaaactccgacacccaacccatct |
531 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||| |||||||| |||||||||| |||| || || ||||||| || ||||||| | || |||| || |
|
|
| T |
49456284 |
tcctccttaaggctcaaaagcacctcctcttcccacatgaaaagatgtcttttccacaagaatttccactccgtacctaactccggctccacccccacct |
49456185 |
T |
|
| Q |
532 |
ctcctacctttgcctccttttggtccgaaatagaatagagcctcggatacctacttctaaaactactatctcctctcca----tcaccccaaaaactaga |
627 |
Q |
| |
|
|||| ||| |||||| ||||| |||| |||||| | ||||| |||||| |||||| || || || || |||||||| |||| |||||||||||| |
|
|
| T |
49456184 |
ctccaaccgaggcctccatttgggccgagatagaaaaaagcctaggatacttacttcggaagcttctttcccctctccaagtatcactccaaaaactaga |
49456085 |
T |
|
| Q |
628 |
gttgagaccattaccaactggtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggtccttccaccaaatagaag |
725 |
Q |
| |
|
||||| ||||| || | | ||||| | ||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||||| ||| ||||| |
|
|
| T |
49456084 |
attgaggccattgcccattttccgctcaagcccggaattaaaccaattaagttcaccaaaatcaccaagcttaattagctccttccacgaaagagaag |
49455987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 52075227 - 52075068
Alignment:
| Q |
329 |
accctccaacctcttataggccgagctcaccataaaaataccggactcatctaacttccacctccatttatcctctaaattagaaaatctagctccctcc |
428 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |||||||||||| || |||| ||||||| ||||| | ||| || |||| || | |||||||| |
|
|
| T |
52075227 |
acccaccaacctcttataggccgaactcaccgaaaaaataccggaatcttctagcttccacttccatctgtccacttgattaatcaaattcactccctcc |
52075128 |
T |
|
| Q |
429 |
aaatcctccttgaggcttaaaagcaccccctctttccacatgagaagatgtcttctccaa |
488 |
Q |
| |
|
||||||||||| | || | ||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
52075127 |
aaatcctcctttaaactaagaagcaccttctcttaccacatgaaaagatgtcttctccaa |
52075068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 490
Target Start/End: Original strand, 17991044 - 17991108
Alignment:
| Q |
426 |
tccaaatcctccttgaggcttaaaagcaccccctctttccacatgagaagatgtcttctccaagt |
490 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||||| |||||||| ||||| ||||||||||| |
|
|
| T |
17991044 |
tccaaatcctccctaaggcttaaaagcacctcctcttcccacatgaatagatgccttctccaagt |
17991108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 701
Target Start/End: Original strand, 17991282 - 17991323
Alignment:
| Q |
660 |
ccgaattgaaccaattaagctccccaaaatcaccaagcttaa |
701 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
17991282 |
ccgaattaaaccaattaagctcaccaaaatcaccaagcttaa |
17991323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 13854227 - 13854168
Alignment:
| Q |
93 |
tcacaatgaagaaataggtgacacgcggattcttcttccctattacacaacccacacaaa |
152 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
13854227 |
tcacaatgtagaaataggtgacacgttgattcttcatccctattacacaagacacacaaa |
13854168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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