View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11236_low_21 (Length: 248)

Name: NF11236_low_21
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11236_low_21
NF11236_low_21
[»] chr6 (23 HSPs)
chr6 (32-178)||(5156306-5156451)
chr6 (21-198)||(5438848-5439024)
chr6 (14-201)||(5283487-5283672)
chr6 (32-151)||(5371978-5372099)
chr6 (19-177)||(5397904-5398061)
chr6 (14-119)||(5181049-5181154)
chr6 (14-200)||(5353138-5353323)
chr6 (32-167)||(5334050-5334181)
chr6 (14-93)||(5448550-5448629)
chr6 (14-119)||(5242790-5242895)
chr6 (19-119)||(5345941-5346041)
chr6 (22-124)||(5101101-5101203)
chr6 (22-124)||(5136202-5136304)
chr6 (14-76)||(5256425-5256487)
chr6 (19-172)||(5126912-5127064)
chr6 (21-119)||(5098126-5098224)
chr6 (47-124)||(5351310-5351387)
chr6 (133-201)||(5256540-5256608)
chr6 (32-119)||(5279476-5279563)
chr6 (21-76)||(5426858-5426913)
chr6 (32-124)||(5177646-5177738)
chr6 (21-93)||(5384132-5384204)
chr6 (32-124)||(5689199-5689291)
[»] chr3 (4 HSPs)
chr3 (14-178)||(47985668-47985831)
chr3 (14-178)||(47994955-47995118)
chr3 (14-178)||(48004242-48004405)
chr3 (14-178)||(48013527-48013690)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 5156306 - 5156451
Alignment:
Q  32 aagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctggaaaaagtaaag 131  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  5156306 aagaaccttcagaattataggttaaccaatttggataactatcactggggaggaaacaaccaccactcccattgccatccatattctgg-aaaagtaaag 5156404  T
Q  132 atatgctcaaaatttaattgagcagtatattaatatcaccttatcat 178  Q
    ||  ||||||||||||||||   ||||||||||||||||||||||||    
T  5156405 atcggctcaaaatttaattgtaaagtatattaatatcaccttatcat 5156451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 5439024 - 5438848
Alignment:
Q  21 aaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctgg 120  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||||| | |||||||||||     
T  5439024 aaaagttacagaagaaccttcagaattaaaggttaaccaatttggataactatcaccggggagaaaacgaccatcactcccattgacatccatattctgt 5438925  T
Q  121 aaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcaccttatcatacattcaacaattaaagata 198  Q
     ||| | | | ||| |||||||||||||| ||   |||||||||||||||  | ||||  ||||||||| ||||||||    
T  5438924 gaaa-gcagatataagctcaaaatttaatcgacaggtatattaatatcacgctgtcatttattcaacaactaaagata 5438848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 5283487 - 5283672
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    ||||||||||||||||| |||||||||| ||  ||||||| ||||||| ||||||||||||||  || || |||||| || |||||| |||| | |||||    
T  5283487 ggacatcaaaagttacagaagaaccttctgaactaaaggtcaaccaatctggataactatcaccaggaagcaaacaatcaccactcctattgacatccat 5283586  T
Q  114 attctggaaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcaccttatcatacattcaacaattaaagatataa 201  Q
    ||||| | |||||| ||| |||||||||||||| |||||  ||||||| |||||||| |||||||  ||||||||||| |||||||||    
T  5283587 attct-gtaaaagt-aaggtatgctcaaaattttattgacaagtatataaatatcactttatcatttattcaacaattgaagatataa 5283672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 5372099 - 5371978
Alignment:
Q  32 aagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctg--gaaaaagtaa 129  Q
    |||||||||||||  || |||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||| |||||||||||  | ||||||||    
T  5372099 aagaaccttcagaactataggttaaccaatttggataactatcattggggaggaaacaaccaccactcccgttgccatccatattctgctggaaaagtaa 5372000  T
Q  130 agatatgctcaaaatttaattg 151  Q
    ||||| ||||||||||||||||    
T  5371999 agataggctcaaaatttaattg 5371978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 5398061 - 5397904
Alignment:
Q  19 tcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattct 118  Q
    |||||||||| | ||||||| |||||  || | ||||||||||||||||||||||| || ||||||||||||||| || |||||||||| || |||||||    
T  5398061 tcaaaagttaaagaagaaccctcagaactataagttaaccaatttggataactatcgctggggaggaaacaaccaccattcccattgccatcgatattct 5397962  T
Q  119 ggaaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcaccttatca 177  Q
     | |||||||||||||  |||||||||||||||   ||| |||||||||||| ||||||    
T  5397961 ag-aaaagtaaagatagtctcaaaatttaattgtcaagtgtattaatatcacgttatca 5397904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 5181049 - 5181154
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||  ||||| | |||||    
T  5181049 ggacttcaaaagttacagaagaaccttcagaattaaaggttaaccaatttggataactatcactggggaggaaataaccaccactttcattgacatccat 5181148  T
Q  114 attctg 119  Q
    ||||||    
T  5181149 attctg 5181154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 5353138 - 5353323
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    |||||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||  ||||||||||||||| |||| |||||  | |||||    
T  5353138 ggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataactatcaccagggaggaaacaaccaccacttccattaacatccat 5353237  T
Q  114 attctggaaaaagtaaagatatgctcaaaa-tttaattgagcagtatattaatatcaccttatcatacattcaacaattaaagatata 200  Q
    ||||| |  ||||||||||   |||||||| |||||||||  || |||||||||| | ||||||||  |||| || |||||| |||||    
T  5353238 attct-gtgaaagtaaaga-gggctcaaaattttaattgacaagcatattaatataatcttatcatttattcgacgattaaacatata 5353323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 5334181 - 5334050
Alignment:
Q  32 aagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctggaaaaagtaaag 131  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||   | ||||||||||| ||||||||||||| |||||||||||| |||| |||||    
T  5334181 aagaaccttcagaattatagcttaaccaatttggataactatcact---ggggaaacaaccaccactcccattgccatccatattctgg-aaaattaaag 5334086  T
Q  132 atatgctcaaaatttaattgagcagtatattaatat 167  Q
    ||  ||||||||||| | |||  |||||||||||||    
T  5334085 atcggctcaaaatttcaatgacgagtatattaatat 5334050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 5448629 - 5448550
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaacca 93  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||  || ||||||||||||    
T  5448629 ggacttcaaaagttacagaagaaccttcagaattaaaggttaaccaatctggataactatcaccgggaaggaaacaacca 5448550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 5242790 - 5242895
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    |||| |||||||| ||| ||||||||||||| |  ||||||||||||| ||||||||| ||||  || || ||||||||| ||||||||||  | |||||    
T  5242790 ggacttcaaaagtaacagaagaaccttcagaatcgaaggttaaccaatctggataactgtcaccaggaagcaaacaaccaccactcccattctcatccat 5242889  T
Q  114 attctg 119  Q
    ||||||    
T  5242890 attctg 5242895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 5346041 - 5345941
Alignment:
Q  19 tcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattct 118  Q
    |||||||| ||| ||||||||||||| || || |||||||||| ||||||||| ||||  || || ||||||||| ||||||||||  | ||||||||||    
T  5346041 tcaaaagtaacagaagaaccttcagaattgaaagttaaccaatctggataactgtcaccaggaagcaaacaaccaccactcccattctcatccatattct 5345942  T
Q  119 g 119  Q
    |    
T  5345941 g 5345941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 5101101 - 5101203
Alignment:
Q  22 aaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctgga 121  Q
    ||||||||| |||||||||| ||   |||||||||||||||||||||||||||||  || || ||||||||| |||| | |||| | || |||||||| |    
T  5101101 aaagttacagaagaaccttccgaaagaaaggttaaccaatttggataactatcaccaggaagcaaacaaccaccactactattgacatctatattctgca 5101200  T
Q  122 aaa 124  Q
    |||    
T  5101201 aaa 5101203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 5136202 - 5136304
Alignment:
Q  22 aaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctgga 121  Q
    ||||||||| |||||||||| ||   |||||||||||||||||||||||||||||  || || ||||||||| |||| | |||| | || |||||||| |    
T  5136202 aaagttacagaagaaccttccgaaagaaaggttaaccaatttggataactatcaccaggaagcaaacaaccaccacttctattgacatctatattctgca 5136301  T
Q  122 aaa 124  Q
    |||    
T  5136302 aaa 5136304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 5256425 - 5256487
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcac 76  Q
    |||| |||||||||||| |||||||||||||  || |||||||||||||||||| ||||||||    
T  5256425 ggacttcaaaagttacagaagaaccttcagaactataggttaaccaatttggatgactatcac 5256487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 5126912 - 5127064
Alignment:
Q  19 tcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattct 118  Q
    |||||||||||  |||||||||| ||||| |||| |||||||| ||||||||||||||  || || |||| |||| ||| || | || | ||||||||||    
T  5126912 tcaaaagttaccgaagaaccttcggagttgaaggctaaccaatatggataactatcaccaggaagcaaactaccaccacaccaactggcatccatattct 5127011  T
Q  119 ggaaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcacct 172  Q
     | |||||| || ||| |||||||||  |||||   |||| |||||||||||||    
T  5127012 -gtaaaagttaaaataggctcaaaatgaaattggaaagtaaattaatatcacct 5127064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 5098224 - 5098126
Alignment:
Q  21 aaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctg 119  Q
    |||||||||  ||||||||||||| | |||||||||||||| |||||||| |||| | || || |||||| || | |||||||||   |||||||||||    
T  5098224 aaaagttaccgaagaaccttcagaatgaaaggttaaccaatctggataaccatcagtgggaagcaaacaatcaccgctcccattgagatccatattctg 5098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 5351387 - 5351310
Alignment:
Q  47 taaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctggaaaa 124  Q
    ||||||||||||||||||||||||||||||  || || |||||||||  ||||| ||||   ||||||||||| ||||    
T  5351387 taaaggttaaccaatttggataactatcaccaggaagcaaacaaccactactcctattgagatccatattctgcaaaa 5351310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 5256540 - 5256608
Alignment:
Q  133 tatgctcaaaatttaattgagcagtatattaatatcaccttatcatacattcaacaattaaagatataa 201  Q
    |||||||||||||| |||||  ||||||| ||||||||||||||||  ||| ||||||| || ||||||    
T  5256540 tatgctcaaaattttattgacaagtatataaatatcaccttatcatttattgaacaattgaatatataa 5256608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 5279563 - 5279476
Alignment:
Q  32 aagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctg 119  Q
    ||||||||||  | || ||||||||||||| |||| ||||||||||||| |  ||||||||| ||| ||||||  | |||||||||||    
T  5279563 aagaaccttcgcaattgaaggttaaccaatctggacaactatcacttggaaacaaacaaccaccacacccattctcatccatattctg 5279476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 5426913 - 5426858
Alignment:
Q  21 aaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcac 76  Q
    |||||||||| |||||||||||||  || |||||||||| ||||||||||| ||||    
T  5426913 aaaagttacagaagaaccttcagaactataggttaaccactttggataactgtcac 5426858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 5177738 - 5177646
Alignment:
Q  32 aagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctggaaaa 124  Q
    ||||||||||  | || ||||||||||||| |||| |||||||||| || |  ||||||||| ||| ||||||  | ||||||||||| ||||    
T  5177738 aagaaccttcgcaattgaaggttaaccaatctggacaactatcactaggaaacaaacaaccaccacacccattctcatccatattctgtaaaa 5177646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 5384204 - 5384132
Alignment:
Q  21 aaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaacca 93  Q
    |||| ||||| ||||||| ||| | || ||| ||||||| |||||||||||||||| |||||| | |||||||    
T  5384204 aaaaattacagaagaaccgtcacatttgaagcttaaccagtttggataactatcacctgggagaacacaacca 5384132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 5689199 - 5689291
Alignment:
Q  32 aagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccatattctggaaaa 124  Q
    ||||||||||  | || ||||||||||||| |||| |||||||||| || |  ||||||||| ||| ||||||  | ||||||||||| ||||    
T  5689199 aagaaccttcgcaattgaaggttaaccaatctggacaactatcactaggaaacaaacaaccaccacacccattctcatccatattctgtaaaa 5689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 47985668 - 47985831
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    |||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||  |  ||||    
T  47985668 ggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccat 47985767  T
Q  114 attctggaaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcaccttatcat 178  Q
    ||||| | |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  47985768 attct-gtaaaagtaaagatatgctcaaaattcaattgaccagtatattagtatcaccttatcat 47985831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 47994955 - 47995118
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    |||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||  |  ||||    
T  47994955 ggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccat 47995054  T
Q  114 attctggaaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcaccttatcat 178  Q
    ||||| | |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  47995055 attct-gtaaaagtaaagatatgctcaaaattcaattgaccagtatattagtatcaccttatcat 47995118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 48004242 - 48004405
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    |||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||  |  ||||    
T  48004242 ggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccat 48004341  T
Q  114 attctggaaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcaccttatcat 178  Q
    ||||| | |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  48004342 attct-gtaaaagtaaagatatgctcaaaattcaattgaccagtatattagtatcaccttatcat 48004405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 48013527 - 48013690
Alignment:
Q  14 ggacatcaaaagttacacaagaaccttcagagttaaaggttaaccaatttggataactatcacttgggaggaaacaaccatcactcccattgccttccat 113  Q
    |||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||  |  ||||    
T  48013527 ggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccattaacagccat 48013626  T
Q  114 attctggaaaaagtaaagatatgctcaaaatttaattgagcagtatattaatatcaccttatcat 178  Q
    ||||| | |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  48013627 attct-gtaaaagtaaagatatgctcaaaattcaattgaccagtatattagtatcaccttatcat 48013690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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