View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11236_low_24 (Length: 235)

Name: NF11236_low_24
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11236_low_24
NF11236_low_24
[»] chr7 (7 HSPs)
chr7 (16-162)||(2335949-2336095)
chr7 (16-162)||(2319586-2319732)
chr7 (163-217)||(2329350-2329404)
chr7 (163-217)||(2337249-2337303)
chr7 (16-155)||(1087053-1087195)
chr7 (16-155)||(1594552-1594694)
chr7 (16-82)||(2327808-2327874)
[»] scaffold0491 (2 HSPs)
scaffold0491 (16-162)||(7777-7923)
scaffold0491 (16-83)||(3232-3299)
[»] chr8 (4 HSPs)
chr8 (16-162)||(18751401-18751550)
chr8 (16-83)||(18741426-18741493)
chr8 (16-83)||(18746390-18746457)
chr8 (18-83)||(18755597-18755662)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 2335949 - 2336095
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca 115  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2335949 atgaacttaacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtactcaatctgcca 2336048  T
Q  116 caatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 162  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  2336049 caatgaaatctcaacttcaaatggaagcaaatgctataatgaatagt 2336095  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 2319586 - 2319732
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca 115  Q
    |||||||||| |||||| ||||||||||||| ||||||||  |||||| ||||||||||||||||||| |||  ||||||||| |||||| ||||||||     
T  2319586 atgaacttgataaaatacttagtttccaatttctatggtcagaaaatgtggatggtctttcttcttatttggcctttcattgtgggtactcaatctgcct 2319685  T
Q  116 caatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 162  Q
    || ||| |||||||| ||| ||| | |||||||| ||| | ||||||    
T  2319686 cagtgacatctcaacctcatatggaagcaaatgcgatattaaatagt 2319732  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 2329350 - 2329404
Alignment:
Q  163 aactatgatgttgtcattgttctttctatccttttgattctgatcttagccttct 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2329350 aactatgatgttgtcattgttcttcctatccttttgattctgatcttagccttct 2329404  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 2337249 - 2337303
Alignment:
Q  163 aactatgatgttgtcattgttctttctatccttttgattctgatcttagccttct 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2337249 aactatgatgttgtcattgttcttcctatccttttgattctgatcttagccttct 2337303  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 1087053 - 1087195
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaat---ctg 112  Q
    |||||||  ||||||||||||||||| |||| || || |||||||||| |||| | ||||||| |||| || | ||| ||||| || ||| |||   |||    
T  1087053 atgaactacacaaaatatttagtttcaaatttctttgatccaaaaatgtggattgcctttcttattatttgcagtttgattgtgggaactcaatctgctg 1087152  T
Q  113 ccacaatgaaatctcaacttcaaatgaacgcaaatgctataat 155  Q
    |||| |||| |||||||||||||||| | ||||||||||||||    
T  1087153 ccactatgacatctcaacttcaaatggaagcaaatgctataat 1087195  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 1594552 - 1594694
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca 115  Q
    |||||||||| |||||||||| |||| ||||||| |||||||||||||| ||| | |||||||||||| || | | | | ||| || ||| |||||||||    
T  1594552 atgaacttgagaaaatatttaatttcaaattcctttggtccaaaaatgatgattgcctttcttcttatttgcagtctgactgtgggaactcaatctgcca 1594651  T
Q  116 caatgaaatctc---aacttcaaatgaacgcaaatgctataat 155  Q
     || || |||||   ||||||||||| | |||||||| |||||    
T  1594652 aaacgacatctcataaacttcaaatggaagcaaatgcaataat 1594694  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 2327808 - 2327874
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttctta 82  Q
    ||||||||||||||||||||| || | |||| | ||  |||||||||| || |||||||||||||||    
T  2327808 atgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttctta 2327874  T

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Target: scaffold0491 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 7923 - 7777
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca 115  Q
    |||| ||||| |||||||||| |||| |||| || ||||||||||||| ||||||||||||||||||| ||   |||  |||  || ||| |||||||||    
T  7923 atgagcttgaaaaaatatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgcca 7824  T
Q  116 caatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 162  Q
    |||||| |||||||||||||||| | |||||||||||| | ||||||    
T  7823 caatgacatctcaacttcaaatggaagcaaatgctatattaaatagt 7777  T

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Target: scaffold0491; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 3299 - 3232
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 83  Q
    |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  3299 atgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 3232  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 18751550 - 18751401
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca 115  Q
    |||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| ||   |||  |||  || ||| |||||||||    
T  18751550 atgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgcca 18751451  T
Q  116 caatgaaatc---tcaacttcaaatgaacgcaaatgctataatgaatagt 162  Q
    |||||| |||   ||||||||||||| | |||||||||||| | ||||||    
T  18751450 caatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagt 18751401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 18741493 - 18741426
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 83  Q
    |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  18741493 atgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 18741426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 18746457 - 18746390
Alignment:
Q  16 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 83  Q
    |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  18746457 atgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 18746390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18755662 - 18755597
Alignment:
Q  18 gaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 83  Q
    |||||||||||||||||||||||| |||| |  ||||||||| ||| |||  | ||||||||||||    
T  18755662 gaacttgacaaaatatttagtttcaaatttcattggtccaaatatgtggaatgcctttcttcttat 18755597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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