View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_low_25 (Length: 235)
Name: NF11236_low_25
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 10124432 - 10124232
Alignment:
| Q |
17 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10124432 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattg |
10124333 |
T |
|
| Q |
117 |
gttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10124332 |
gttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaat |
10124233 |
T |
|
| Q |
217 |
a |
217 |
Q |
| |
|
| |
|
|
| T |
10124232 |
a |
10124232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 28649992 - 28649847
Alignment:
| Q |
58 |
tgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagc |
157 |
Q |
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||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||| || | |
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| T |
28649992 |
tgcaatcgtgaaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatc |
28649893 |
T |
|
| Q |
158 |
ttgaacaattgaaatatttttgcaagtataatagccatcatcgaac |
203 |
Q |
| |
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|| |||||||||| ||||||||||||||||| | ||||||| |||| |
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|
| T |
28649892 |
ttaaacaattgaagtatttttgcaagtataacaaccatcatagaac |
28649847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 21393062 - 21393224
Alignment:
| Q |
55 |
cattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgta |
154 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
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| T |
21393062 |
cattgcaatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgca |
21393161 |
T |
|
| Q |
155 |
agcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaata |
217 |
Q |
| |
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|||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||||| |
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|
| T |
21393162 |
agcttgaacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggtgccaagaata |
21393224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 21422334 - 21422538
Alignment:
| Q |
17 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattg |
116 |
Q |
| |
|
|||||| ||||||| |||||| |||| || |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| |
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|
| T |
21422334 |
cagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgctgagaagaaaaagaatatctattg |
21422433 |
T |
|
| Q |
117 |
gttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaa |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| | |||||||| || |||||||| |
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| T |
21422434 |
gttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataacaatcatcatcgcacaggtgccaa |
21422533 |
T |
|
| Q |
213 |
gaata |
217 |
Q |
| |
|
||||| |
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|
| T |
21422534 |
gaata |
21422538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
| Q |
49 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
148 |
Q |
| |
|
||||| |||||||||||| |||| ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | |||||||||||||||| |
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|
| T |
1975279 |
tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt |
1975180 |
T |
|
| Q |
149 |
gttg |
152 |
Q |
| |
|
|||| |
|
|
| T |
1975179 |
gttg |
1975176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 25040811 - 25040618
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
123 |
Q |
| |
|
||||||| |||||| |||| || ||| ||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25040811 |
tttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctgagaagaaaaagaatatcaattggttgttt |
25040712 |
T |
|
| Q |
124 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaata |
217 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||| | ||||||||||||| |
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|
| T |
25040711 |
ctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacggtcatcatcgagctggtgccaagaata |
25040618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 25044549 - 25044356
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
123 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||| |||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
25044549 |
tttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgttt |
25044450 |
T |
|
| Q |
124 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaata |
217 |
Q |
| |
|
||| || | ||||||||||| |||||||| || ||| |||||||||| ||||||||||||||||| | ||||||| |||| |||||||| |||| |
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|
| T |
25044449 |
ctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggtgccaaaaata |
25044356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 54479360 - 54479457
Alignment:
| Q |
49 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttgg |
146 |
Q |
| |
|
|||||||| || |||||| ||||| |||||||||||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| |
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|
| T |
54479360 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg |
54479457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 25042958 - 25042801
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaag--aatatcaattggttgt |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| ||| | ||||||| | |||| |||| ||||||||||| |||||||| | | || |
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|
| T |
25042958 |
tttgatgtatccaagattgctgaagtgtgtgcatt--tatcgagata---gtgtgaaactggtacttgccaagaagaaaaagataatatcaactagatgc |
25042864 |
T |
|
| Q |
122 |
ttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagt |
184 |
Q |
| |
|
|||||||| | |||||||||||||| || || |||||||||| | |||||||| ||| ||||| |
|
|
| T |
25042863 |
ttctgttgttgggacaaatgcttggctgctgcaagcttgaaccactgaaatatattttcaagt |
25042801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 24690740 - 24690547
Alignment:
| Q |
24 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
123 |
Q |
| |
|
||||||| ||||||||||| || ||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
24690740 |
tttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattattgagaagaaaaagaatatcaattgattgttt |
24690641 |
T |
|
| Q |
124 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaata |
217 |
Q |
| |
|
||||| || |||||||| |||||||||| |||| |||| |||| | ||||||||||||||||| | ||||||||||| ||||||| |||| |
|
|
| T |
24690640 |
ctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataacaatcatcatcgaacaagtgccaaaaata |
24690547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
| Q |
109 |
atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa |
182 |
Q |
| |
|
||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| ||||| |
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|
| T |
39600540 |
atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa |
39600467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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