View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11236_low_26 (Length: 226)
Name: NF11236_low_26
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_26 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33115975 - 33116200
Alignment:
| Q |
1 |
agcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115975 |
agcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgacc |
33116074 |
T |
|
| Q |
101 |
gttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgtattcattgacattcttctttgcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116075 |
gttttcatgtttggattggccattccatatcaccattggaccatgaaaggaaaccaaattggttttgttgtcatgtattcattgacattcttctttgcta |
33116174 |
T |
|
| Q |
201 |
attttggtccaaatgcaacgacgttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33116175 |
attttggtccaaatgcaacgacgttt |
33116200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 30620049 - 30619944
Alignment:
| Q |
8 |
tgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttca |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || || || || || |||||||||||||| ||||| ||||| | |
|
|
| T |
30620049 |
tgcagtacagttcctggttactggttcacagttgcattcattgatagaattggaaggttcactattcagttaatgggatttttctttatgacagttttta |
30619950 |
T |
|
| Q |
108 |
tgtttg |
113 |
Q |
| |
|
|||||| |
|
|
| T |
30619949 |
tgtttg |
30619944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 30615292 - 30615190
Alignment:
| Q |
11 |
agtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttcatgt |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || || || || |||||||| ||||| ||||| ||||| |||| |
|
|
| T |
30615292 |
agtacagttcctggttactggttcacagtggcactcattgatagaatgggaaggttcactattcagttaatgggattcttctttatgacagtttttatgt |
30615193 |
T |
|
| Q |
111 |
ttg |
113 |
Q |
| |
|
||| |
|
|
| T |
30615192 |
ttg |
30615190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 16184911 - 16185055
Alignment:
| Q |
78 |
tgatgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgta |
177 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| | | ||||| |||||| | ||||||| || | | | || |||||| |||||||| ||||| |
|
|
| T |
16184911 |
tgatgggattcttcttcatgactgttttcatgtttgcacttgccataccatatgatcattggagcaaggaagagaatagaattgggtttgttgtaatgta |
16185010 |
T |
|
| Q |
178 |
ttcattgacattcttctttgctaattttggtccaaatgcaacgac |
222 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16185011 |
ctcactcacattcttctttgctaattttggtccaaatgctacgac |
16185055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 16224301 - 16224445
Alignment:
| Q |
78 |
tgatgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgta |
177 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| | | ||||| |||||| | ||||||| || | | | || |||||| |||||||| || || |
|
|
| T |
16224301 |
tgatgggattcttcttcatgactgttttcatgtttgcacttgccataccatatgatcattggagcaaggaagagaatagaattgggtttgttgtaatata |
16224400 |
T |
|
| Q |
178 |
ttcattgacattcttctttgctaattttggtccaaatgcaacgac |
222 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16224401 |
ctcactcacattcttctttgctaattttggtccaaatgctacgac |
16224445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 216
Target Start/End: Complemental strand, 16174451 - 16174313
Alignment:
| Q |
78 |
tgatgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttgtcatgta |
177 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| | ||||| |||||| | ||||||| || | | | || |||||| |||||||| ||||| |
|
|
| T |
16174451 |
tgatgggattcttcttcatgactgttttcatgtttgctcttgccataccatatgatcattggagcaaggaagagaatagaattgggtttgttgtaatgta |
16174352 |
T |
|
| Q |
178 |
ttcattgacattcttctttgctaattttggtccaaatgc |
216 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
16174351 |
ctcactaacattcttctttgctaattttggtccaaatgc |
16174313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 33110004 - 33110149
Alignment:
| Q |
71 |
atccaattgatgggatttttcttcatgaccgttttcatgtttggattggccattccatatcaccattggaccatgaatggaaaccaaattggttttgttg |
170 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||| | || || || ||| | |||||||| | ||| | |||| |||||| ||||||| |
|
|
| T |
33110004 |
atccaattgatgggtttcttcttcatgaccgtcttcatgtttgctctagctataccttatgatcattggactaagaaagaaaacagaattgggtttgttg |
33110103 |
T |
|
| Q |
171 |
tcatgtattcattgacattcttctttgctaattttggtccaaatgc |
216 |
Q |
| |
|
| ||||| ||||| || ||||| ||||| ||||| ||||||||||| |
|
|
| T |
33110104 |
taatgtactcattaactttcttttttgccaatttcggtccaaatgc |
33110149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 38894023 - 38894145
Alignment:
| Q |
8 |
tgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttca |
107 |
Q |
| |
|
|||||||| ||||| || |||||||| || ||||| |||||||| || || ||||| |||| |||||||||||||||||| ||||| ||||| || |||| |
|
|
| T |
38894023 |
tgcagtacagttccaggctactggtttacggtggctctcattgacaggataggaaggtttaaaatccaattgatgggattcttctttatgactgtcttca |
38894122 |
T |
|
| Q |
108 |
tgtttggattggccattccatat |
130 |
Q |
| |
|
|||||| | |||||||||||| |
|
|
| T |
38894123 |
tgtttgctcttgccattccatat |
38894145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 38884837 - 38885045
Alignment:
| Q |
8 |
tgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttca |
107 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || ||||| |||| || ||||| ||||||||||| ||||||||||||||||| ||||| ||||| | |||| |
|
|
| T |
38884837 |
tgcagtacagttccaggttattggtttaccgtggctttcatagacagaataggaagatttaccatccaattgatgggattcttctttatgactgccttca |
38884936 |
T |
|
| Q |
108 |
tgtttggattggccattccatatcaccattggac-catgaatggaaaccaaattggttttgttgtcatgtattcattgacattcttctttgctaattttg |
206 |
Q |
| |
|
|||||| | |||||||| ||| | || ||||| ||| || | ||||| ||| || ||||| || || ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
38884937 |
tgtttgctcttgccattccttatgaacactggactcat-aaggaaaaccgaataggatttgtggtgatatattccttgaccttcttctttgcaaattttg |
38885035 |
T |
|
| Q |
207 |
gtccaaatgc |
216 |
Q |
| |
|
| || ||||| |
|
|
| T |
38885036 |
ggcctaatgc |
38885045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University