View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_low_27 (Length: 209)
Name: NF11236_low_27
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 33116758 - 33116567
Alignment:
| Q |
18 |
gtacttaacaatgatgtattaaataaaaacaagnnnnnnnactctgaggccaacttcttgttttggaagacataccttctccaaactcacccaattaatt |
117 |
Q |
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| T |
33116758 |
gtacttaacaatgatgtattaaataaaaacaagtttttttactctgaggccaacttcttgttttggaagacataccttctccaaactcacccaattaatt |
33116659 |
T |
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| Q |
118 |
ctcctaccttctaatnnnnnnnnnnnnnnnnnnntactacaacttgaaacatggaggacataaactattaaaccaaacacatgaatgtcaag |
209 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116658 |
ctcctaacttctaataaaaagaaagaaaaaaaaatactacaacttgaaacatggaggacataaactattaaaccaaacacatgaatgtcaag |
33116567 |
T |
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