View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_low_28 (Length: 207)
Name: NF11236_low_28
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 899283 - 899425
Alignment:
| Q |
19 |
gaacctacaatttggaacttttgattttagaatcaacttttacattaagatttattgtttaattagtcattttggttttacgtatttaaataaatccctt |
118 |
Q |
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| T |
899283 |
gaacctacaatttggaacttttgattttagaatcaacttttacattaagatttattgtttaattagtcattttggttttacgtatttaaataaatccctt |
899382 |
T |
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| Q |
119 |
tagtttcaaaaattaaatgtacatcactctaattcaatactca |
161 |
Q |
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| T |
899383 |
tagtttcaaaaattaaatgtacatcactctaattcaatactca |
899425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 4799336 - 4799298
Alignment:
| Q |
160 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
198 |
Q |
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| T |
4799336 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
4799298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 4804316 - 4804278
Alignment:
| Q |
160 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
198 |
Q |
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| T |
4804316 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
4804278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 4800493 - 4800455
Alignment:
| Q |
160 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
198 |
Q |
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| T |
4800493 |
catcgtttgatgcaccaatcgatatctttcttttctctc |
4800455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 22332128 - 22332166
Alignment:
| Q |
160 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
198 |
Q |
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| T |
22332128 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
22332166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 23834053 - 23834015
Alignment:
| Q |
160 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
198 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
23834053 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
23834015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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