View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_low_4 (Length: 630)
Name: NF11236_low_4
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 256 - 612
Target Start/End: Original strand, 53660244 - 53660600
Alignment:
| Q |
256 |
aacaagagagatggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgnnnnnnnctaaaattcatgttagct |
355 |
Q |
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| T |
53660244 |
aacaagagagagggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgaaaaaaactaaaattcatgttagct |
53660343 |
T |
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| Q |
356 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaacttgtctaggttcgtcttaaacttcctcatccaaacct |
455 |
Q |
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| T |
53660344 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaactagtctaggttcgtcttaaacttcctcatccaaacct |
53660443 |
T |
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| Q |
456 |
gtaggttatacatttaaaaatttagaagtaaccaaccctatggcaatgcttatatatatacacagacctctggagccatccaccgatatgttccggtctc |
555 |
Q |
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| T |
53660444 |
gtaggttatacattttaaaatttagaagtaaccaaccctatggcaatgcttatatatatacacagacctctggagccatccaccgatatgttccggtctc |
53660543 |
T |
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| Q |
556 |
tgcagtcattataccagaacgattgcgcactctggctacaccaaaatcagcaacctt |
612 |
Q |
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| T |
53660544 |
tgcagtcattataccagaacgattgcgcactctggctacaccaaaatcagcaacctt |
53660600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 53659959 - 53660208
Alignment:
| Q |
11 |
cagagaacaattgcaaagctaaagacatcagctttgtgatcataaggtttatgctcaataacctttcatatgtaagagagatcacaaattagttgtaatt |
110 |
Q |
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| T |
53659959 |
cagagaacaattgcaaagctaaagacatcagctttgtgatcatatggtttatgctcaataacctttcatatgtaagagagatcacaaattagttgtaatt |
53660058 |
T |
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| Q |
111 |
gttttga-caaagacaagaataaaccacacacaagttggaagatcaaaggaaaaagaggaaagaacaagacacaaaagtttacgcgatttggtcaatgtg |
209 |
Q |
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| T |
53660059 |
gttttgaccaaagacaagaataaaccacacacaagtcggaagatcaaaggaaaaagaggaaagaacaagacacaaaagtttacgcgatttggtcaatgtg |
53660158 |
T |
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| Q |
210 |
acctatgtcacnnnnnnntcagtgagatacttatttcgttaggacgaaca |
259 |
Q |
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| T |
53660159 |
acctacgtcacaaagaaatcagtgagatacttatttcgttaggacgaaca |
53660208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 511 - 609
Target Start/End: Original strand, 8449624 - 8449722
Alignment:
| Q |
511 |
atatacacagacctctggagccatccaccgatatgttccggtctctgcagtcattataccagaacgattgcgcactctggctacaccaaaatcagcaac |
609 |
Q |
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| T |
8449624 |
atatacacatacctctggagccatccaccggtacgttccagtttccgcagtcatgataccggattgattttgcaatctggctacaccaaaatcagcaac |
8449722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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