View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11236_low_5 (Length: 551)
Name: NF11236_low_5
Description: NF11236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11236_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 274 - 543
Target Start/End: Original strand, 4759684 - 4759953
Alignment:
| Q |
274 |
cttacatgtaagttccatcagctaggtaaatcaacgccgttaaccctgctctccggtgactaaccacctgcgacgccaccatagataccaaaaccggcac |
373 |
Q |
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| T |
4759684 |
cttacgtgtaagttccatcagctaggtaaatcaacgccgtcaaccctgctctccggtgactaaccacctgtgacgccaccatagataccaaaaccggcac |
4759783 |
T |
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| Q |
374 |
cactccaagttctgttatcaactttctaaccttaacatcttctttaactaaactttcaatctcttttgcagctatctccttctcttcccagcttccaaag |
473 |
Q |
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| T |
4759784 |
cactccaagttctgttatcaactttctaaccttaacatcttctttaactaaactttcaatctcttttgcagctatctccttctcttcccagcttccaaag |
4759883 |
T |
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| Q |
474 |
tgaagcatcttcactgtcttttgcagcaaaatttcagtttcttccaccacctcctcctcctccctatgct |
543 |
Q |
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| T |
4759884 |
tgaagcatcttcactgtcttttgcagcaaaatttcagtttcttccaccacctcctcctcctccttatgct |
4759953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 4759414 - 4759655
Alignment:
| Q |
19 |
agtttcacaaaagttaatactaatataaacatacatgattgaattgcttgcttcttgttaatcttttttaattccaacaaaaataataagactatcaaac |
118 |
Q |
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| T |
4759414 |
agtttcacaaaagttcatactaatataaacatacattattgaattgcttgcttcttgttaatcttttttaattccaacaaaaataataagactatcaaac |
4759513 |
T |
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| Q |
119 |
tctaaaaaacattgtaactttagtagaagtgatgcatat-aaaaaactaataagacatgaagnnnnnnnntctagagacatttcatatattgtgacatga |
217 |
Q |
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| T |
4759514 |
tctaaaaaacattgtagctttagtagaagtgatgcatataaaaaaactaataagacatgaagaaaaaaaatctagagacatttcatatattgtgagacga |
4759613 |
T |
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| Q |
218 |
gtttgaacctggtggtgcgtgaaattcgctgttaggctgcttgat |
262 |
Q |
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| T |
4759614 |
gtttgaacc---tggtgcgtgaaattcgctgttaggctgcttgat |
4759655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 487
Target Start/End: Original strand, 26982154 - 26982283
Alignment:
| Q |
358 |
ataccaaaaccggcaccactccaagttctgttatcaactttctaaccttaacatcttctttaactaaactttcaatctcttttgcagctatctccttctc |
457 |
Q |
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||||||| || |||||||| | |||||| || ||||||||||| ||||||||||||| |||| | | | ||||| |||||||| ||| ||| ||||| |
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| T |
26982154 |
ataccaatacaggcaccacccgaagttcagtcatcaactttctgaccttaacatcttgtttagccagcatctcaatatcttttgctgcttcctctttctc |
26982253 |
T |
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| Q |
458 |
ttcccagcttccaaagtgaagcatcttcac |
487 |
Q |
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| T |
26982254 |
ttcccagctcccaaagtgaagcttcttcac |
26982283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 487
Target Start/End: Complemental strand, 26999187 - 26999135
Alignment:
| Q |
435 |
tcttttgcagctatctccttctcttcccagcttccaaagtgaagcatcttcac |
487 |
Q |
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|||||||| ||| ||| |||||||||||||| |||||||||||| ||||||| |
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| T |
26999187 |
tcttttgctgcttcctctttctcttcccagctcccaaagtgaagcttcttcac |
26999135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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