View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11237_high_12 (Length: 260)
Name: NF11237_high_12
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 25508400 - 25508599
Alignment:
| Q |
51 |
attctcaagttaactcataatatctacagtttatgagtcttacgtctcaaaatagagtaaacttgatttcgcaaaggattgaacgagtcctacgtcacaa |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25508400 |
attctcaagttaactcataatatctacagtttatgagtcttacgtctcaaaatcgagtaaacttgatttcacaaaggattgaacgagtcctacgtcacaa |
25508499 |
T |
|
| Q |
151 |
aatgacaatggttcaatgttcttataaaactcataaggcaacaattggatgtgataaggcttagtagtacacaaacattaatctgtgttatagccctatg |
250 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25508500 |
aatgacaatggttcaatgtttttataaaactcaaaaggcaacaattggatgtgataaggcttagtagtacacaaacattaatctgtgttatagccctatg |
25508599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 25556614 - 25556494
Alignment:
| Q |
130 |
tgaacgagtcctacgtcacaaaatgacaatggttcaatgttcttataaaactcataaggcaacaattggatgtgataaggcttagtagtacacaaacatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25556614 |
tgaacgagtcctacgtcacaaaatgacaatggttcaatgtttttataaaactcaaaaggcaacaattggatgtgataaggcttagtagtacacaaacatt |
25556515 |
T |
|
| Q |
230 |
aatctgtgttatagccctatg |
250 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25556514 |
aatctgtgttatagccctatg |
25556494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University