View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11237_high_2 (Length: 488)
Name: NF11237_high_2
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 476
Target Start/End: Complemental strand, 35416534 - 35416080
Alignment:
| Q |
22 |
ccactcctcacaaccgctgcaaacgctaccgcggttgcagactacctctgcacccaattcaacaccatctcaaataaactcagcgacaccacctatgcaa |
121 |
Q |
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||||||||||| |||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35416534 |
ccactcctcaccaccgctgcaaacgctaccgctgtagctgactacctatgcacccaattcaacaccatctcaaataaactcagcgacaccacttatgcaa |
35416435 |
T |
|
| Q |
122 |
tagacaacacctaccttctcttctcagcttatttagtctttgccatgcagcttggttttgccatgctctgtgccggctccgttcgagccaaaaacactat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||| |
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| T |
35416434 |
tagacaacacctaccttctcttctcagcttatttagtctttgccatgcagcttggtttcgctatgctctgcgctggctccgttcgagccaaaaacactat |
35416335 |
T |
|
| Q |
222 |
gaacatcatgctcaccaatgtcctcgacgctgcagctggtggcctctcctactatctcttcggctttgctttcgcctttggagcaccctccaacggcttc |
321 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35416334 |
gaacatcatgctcaccaatgtccttgacgctgcagccggtggcctctcctactatctcttcggctttgctttcgcctttggagcaccctccaacggcttc |
35416235 |
T |
|
| Q |
322 |
atcggccgccactttttcggtctaagggattacccttcaccttcaggtgactatagctttttcctctaccagtgggccttcgccatcgccgctgccggta |
421 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
35416234 |
attggccgccactttttcggtctaagggattatccttcaccttccggtgactacagcttcttcctctaccagtgggccttcgccatcgctgctgccggta |
35416135 |
T |
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| Q |
422 |
tcaccagcggctccattgcagagagaactcaatttgtagcctatctcatatattc |
476 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35416134 |
tcaccagcggctccattgcagagagaactcaatttgtcgcctatctcatatattc |
35416080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 124 - 308
Target Start/End: Complemental strand, 17091438 - 17091254
Alignment:
| Q |
124 |
gacaacacctaccttctcttctcagcttatttagtctttgccatgcagcttggttttgccatgctctgtgccggctccgttcgagccaaaaacactatga |
223 |
Q |
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||||||||||| ||| | ||||||||||| | ||||| | ||||| ||||||||||||||||||||||| || || ||||| || || ||||| |||| |
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| T |
17091438 |
gacaacacctatcttttattctcagcttaccttgtcttctctatgcaacttggttttgccatgctctgtgctggttcagttcgtgctaagaacaccatga |
17091339 |
T |
|
| Q |
224 |
acatcatgctcaccaatgtcctcgacgctgcagctggtggcctctcctactatctcttcggctttgctttcgcctttggagcacc |
308 |
Q |
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||||||||||||| ||||| |||||||| || ||||| || | | ||||||||||||||| ||||| || ||||| ||| |||| |
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| T |
17091338 |
acatcatgctcacaaatgttctcgacgccgctgctggcggtgttttctactatctcttcggttttgcctttgccttcggaacacc |
17091254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 46670358 - 46670240
Alignment:
| Q |
124 |
gacaacacctaccttctcttctcagcttatttagtctttgccatgcagcttggttttgccatgctctgtgccggctccgttcgagccaaaaacactatga |
223 |
Q |
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|||||||| |||||||| ||||||||||| | || ||||||||||| || |||||||| ||||| |||||||| || ||||| |||||||||||||||| |
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| T |
46670358 |
gacaacacttaccttctattctcagcttaccttgtttttgccatgcaactaggttttgctatgctttgtgccggttctgttcgtgccaaaaacactatga |
46670259 |
T |
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| Q |
224 |
acatcatgctcaccaatgt |
242 |
Q |
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|||| ||| | |||||||| |
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| T |
46670258 |
acattatgttaaccaatgt |
46670240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 242
Target Start/End: Complemental strand, 39642179 - 39642043
Alignment:
| Q |
106 |
gacaccacctatgcaatagacaacacctaccttctcttctcagcttatttagtctttgccatgcagcttggttttgccatgctctgtgccggctccgttc |
205 |
Q |
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||||| |||||||| | ||||||||||||||||||||||| |||| | || ||||||||||| || |||||||||||||| ||||| || ||||||| |
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| T |
39642179 |
gacacaacctatgccgttgacaacacctaccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttc |
39642080 |
T |
|
| Q |
206 |
gagccaaaaacactatgaacatcatgctcaccaatgt |
242 |
Q |
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| T |
39642079 |
gtgccaaaaacaccatgaatattatgttaaccaatgt |
39642043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 25545202 - 25545093
Alignment:
| Q |
133 |
taccttctcttctcagcttatttagtctttgccatgcagcttggttttgccatgctctgtgccggctccgttcgagccaaaaacactatgaacatcatgc |
232 |
Q |
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|||||||||||||| | || |||||||||| ||||| || || ||||||||| | ||||| || || || || |||||||| | |||||||| |||| |
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| T |
25545202 |
taccttctcttctctacctacttagtctttgtaatgcaactaggctttgccatgatatgtgcaggatctgtccgtgccaaaaatgccatgaacataatgc |
25545103 |
T |
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| Q |
233 |
tcaccaatgt |
242 |
Q |
| |
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|||||||||| |
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| T |
25545102 |
tcaccaatgt |
25545093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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