View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11237_low_1 (Length: 582)
Name: NF11237_low_1
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 28810756 - 28810192
Alignment:
| Q |
1 |
gaaagacggagaagaaaaagatgacgacgaagaagttaatgataaaattgaagctcaaaaacctgttacttcaattgtgctggcatataagttgcttaca |
100 |
Q |
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| T |
28810756 |
gaaagacggagaagaaaaagatgacgacgaagaagttaatgataaaattgaagctcaaaaacctgttacttcaattgtgctggcatataagttgcttaca |
28810657 |
T |
|
| Q |
101 |
ccatcagtaaaggtaaggaacagctattgattttaatttcatgcatttaattttaaatattttctacttagtcttgacttatgaaacttcttcaatatga |
200 |
Q |
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| T |
28810656 |
ccatcagtaaaggtaaggaacagctattgattttaatttcatgcatttaattttaaatattttctacatagtcttgacttatgaaacttcttcaatatga |
28810557 |
T |
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| Q |
201 |
ataatttgaatttgtcgtcggatttataatatgaagtataattcaatctttttatgcactaacgatgaatgtttttattaggtacaattatttgtgtatt |
300 |
Q |
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| T |
28810556 |
ataatatgaatctgtcgtcggatttataatatgaagtataattcaatctttttatgcactaacgatgaatgtttttattaggttcaattatttgtgtatt |
28810457 |
T |
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| Q |
301 |
ttatgctcaagtatgcaatggagatagtgcttgctgaatcaagccttataacagaatactattttatttggtcaaccaccaaagtagccattttccttgc |
400 |
Q |
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| T |
28810456 |
ttatgctcaagtatgcaatggagatagtgcttgctgaatcaagccttataacagaatactattttatttggtcaaccaccaaagtagccattttccttgc |
28810357 |
T |
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| Q |
401 |
atgccttggtcttactgtccttcctgtgaatattgttattggaagctacatcagcaacatctttgaagaaaggtagatcttcaagtgttatcttagccaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
28810356 |
atgccttggtcttactgtccttcctgtgaatattgttattggaagctacatcagcaacatctttgaagaaaggtagaccttcaagtgttatcttatccaa |
28810257 |
T |
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| Q |
501 |
aaatttaaatgatgttcaccgtttcttgttagtagctagaaagtgtattaagaatgaaccatatt |
565 |
Q |
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| T |
28810256 |
aaatttaaatgatgttcaccgtttcttgttagtagctagaaagtgtattaagaatgaaccatatt |
28810192 |
T |
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