View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11237_low_13 (Length: 247)
Name: NF11237_low_13
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 31100548 - 31100360
Alignment:
| Q |
51 |
gttccaagttaccacgtttatacggttttaatccatgatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatc |
150 |
Q |
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| T |
31100548 |
gttccaagttaccatgtttatgcggttttaatccatgatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatc |
31100449 |
T |
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| Q |
151 |
aatgcgccgacttcatggcgaagcttggggccaactccaatgaagaactttctgttcatgctactcctccaatcgacttactccctttg |
239 |
Q |
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| T |
31100448 |
aatgcgccgacttcatggcgaagcatggggccaactccaatgaagatctttctattcatgctactcctccgaccgacttactccctttg |
31100360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 7819166 - 7819354
Alignment:
| Q |
51 |
gttccaagttaccacgtttatacggttttaatccatgatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatc |
150 |
Q |
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| T |
7819166 |
gttccaagttaccatgtttatgcggttttaatccatgatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatc |
7819265 |
T |
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| Q |
151 |
aatgcgccgacttcatggcgaagcttggggccaactccaatgaagaactttctgttcatgctactcctccaatcgacttactccctttg |
239 |
Q |
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| T |
7819266 |
aatgcgccgacttcatggcgaagcttggggccaactccaatgaagatctttccattcatgctactcctccgaccgacctactccctttg |
7819354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 19358161 - 19358091
Alignment:
| Q |
169 |
cgaagcttggggccaactccaatgaagaactttctgttcatgctactcctccaatcgacttactccctttg |
239 |
Q |
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| T |
19358161 |
cgaagcttggggccaacttcaatgaagatctttctattcatgctactgctccgaccgacctcctccctttg |
19358091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 31997797 - 31997985
Alignment:
| Q |
51 |
gttccaagttaccacgtttatacggttttaatccatgatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatc |
150 |
Q |
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| T |
31997797 |
gttccaagttaccatgtttatgcggtgttaatccatgatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatc |
31997896 |
T |
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| Q |
151 |
aatgcgccgacttcatggcgaagcttggggccaactccaatgaagaactttctgttcatgctactcctccaatcgacttactccctttg |
239 |
Q |
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| T |
31997897 |
aatgcgccgacttcatggcgaagcctagggccaactccaatgaagatctttctattcatgctactcctccgaccgacctcctccctttg |
31997985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 191
Target Start/End: Original strand, 35601254 - 35601370
Alignment:
| Q |
75 |
gttttaatccatgatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagc |
174 |
Q |
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| T |
35601254 |
gttttaatacaagacataaaagacctcttgtcctcaagaagcttcaccattcatcattgtctccgtgaaggaaatcaatgtactgactacatggcaaaga |
35601353 |
T |
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| Q |
175 |
ttggggccaactccaat |
191 |
Q |
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| T |
35601354 |
ttggggccaactccaat |
35601370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 7445951 - 7445866
Alignment:
| Q |
135 |
ctccgtgaaggaaatcaatgcgccgacttcatggcgaagcttggggccaactccaatgaagaactttctgttcatgctactcctcc |
220 |
Q |
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| T |
7445951 |
ctccgtgaaggaaatcagtgcgccgatttcatggcgaagcttggggccaacaacaatgaagatctttcttttcatgctactcctcc |
7445866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 50234608 - 50234568
Alignment:
| Q |
129 |
cattgcctccgtgaaggaaatcaatgcgccgacttcatggc |
169 |
Q |
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| T |
50234608 |
cattgcctccgtgaaggaaaccaatgcgctgatttcatggc |
50234568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 36834219 - 36834134
Alignment:
| Q |
112 |
gaaacttcaacattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcttggggccaactccaatgaagaa |
197 |
Q |
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| T |
36834219 |
gaaacttctccattcatcattgcctcggagaagggaatcaatgtgcagacttcttggctaagcttggagccacctcgaatgaagaa |
36834134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 15462667 - 15462629
Alignment:
| Q |
124 |
ttcatcattgcctccgtgaaggaaatcaatgcgccgact |
162 |
Q |
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| T |
15462667 |
ttcatcattgtctccgtgaaggaaatcaatgcgcggact |
15462629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 11752083 - 11752164
Alignment:
| Q |
87 |
gatataaaagatctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatgg |
168 |
Q |
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| T |
11752083 |
gatattaaagatctcttgtccacaagaaatttctcgattcatcattgtccgagagaaggaaatcaatgtgctgacttcatgg |
11752164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 46954242 - 46954202
Alignment:
| Q |
129 |
cattgcctccgtgaaggaaatcaatgcgccgacttcatggc |
169 |
Q |
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| T |
46954242 |
cattgcctccgtgaaggaaaccaatgcgctgatttcatggc |
46954202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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