View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11237_low_17 (Length: 223)
Name: NF11237_low_17
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_17 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34788559 - 34788781
Alignment:
| Q |
1 |
tggctgcgctatatttatttgtggtacgtttgatttgaatgctgttttgttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34788559 |
tggcagcgctatatttatttgtggtacgtttgatttgaatgctgttttgttgtcggtttgtttatttatcatttagtgatttttcattttctagtggtat |
34788658 |
T |
|
| Q |
101 |
ttagtattttctgcgtgtatcttaggattaatgatgcactttatgaagaacttgatgctggagatagggagcgaacaagagatgtgtacaagtaagcagc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
34788659 |
ttattattttctgcgtgtatcttaggattaattatgcactttatgaagaacttgatgctggagatatggagcaaacaagagatgtgtacaagtaagcagc |
34788758 |
T |
|
| Q |
201 |
cttttgtgaacttctaagtattt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34788759 |
cttttgtgaacttctaagtattt |
34788781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2292635 - 2292421
Alignment:
| Q |
1 |
tggctgcgctatatttatttgtggtacgtttgatttgaatgctgttttgttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||| ||||| |||||||||||||| | ||||||| |
|
|
| T |
2292635 |
tggcagcgctatatttatttgtggtatgtttgatttgaattctgttttgttatctgtttgtttatttattatttattgattttgcatttttttgtggtat |
2292536 |
T |
|
| Q |
101 |
ttagtattt-tctgcgtgtatcttaggattaatgatgcactttatgaagaacttgatgctggagatagggagcgaacaagagatgtgtacaagtaagcag |
199 |
Q |
| |
|
||| ||||| |||| || || |||||||||||| ||||||| ||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
2292535 |
ttattatttgtctgtgtataacttaggattaattatgcactctatgaagaactcgatgctggagacatggagcgaacaagagacgtgtacaagtaagcag |
2292436 |
T |
|
| Q |
200 |
ccttttgtgaacttc |
214 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2292435 |
ccttttgtgaacttc |
2292421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 2597779 - 2597576
Alignment:
| Q |
9 |
ctatatttatttgtggtacgtttgatttgaatgctgttttgttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttagtatt |
108 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||||||| | | |||||||||||||| |||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
2597779 |
ctatatttatctgtggtatgtttgatttgaattttgttttggtagctgtttgtttatttattatttagtgattttgcattttcttgtggtatttattatt |
2597680 |
T |
|
| Q |
109 |
t-tctgcgtgtatcttaggattaatgatgcactttatgaagaacttgatgctggagatagggagcgaacaagagatgtgtacaagtaagcagccttttgt |
207 |
Q |
| |
|
| || ||||| ||| |||||| | |||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
2597679 |
tgtccatgtgtaactttggattagttatgcactttatgaagaacttaatgttggagatattgagcgaacaagagacgtgtacaggtaagcagccttttct |
2597580 |
T |
|
| Q |
208 |
gaac |
211 |
Q |
| |
|
|||| |
|
|
| T |
2597579 |
gaac |
2597576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 49279935 - 49279879
Alignment:
| Q |
134 |
atgcactttatgaagaacttgatgctggagatagggagcgaacaagagatgtgtaca |
190 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
49279935 |
atgcactctatgaagagcttgatgctggagatatggagcgagcaagagatgtgtaca |
49279879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 49276386 - 49276322
Alignment:
| Q |
126 |
gattaatgatgcactttatgaagaacttgatgctggagatagggagcgaacaagagatgtgtaca |
190 |
Q |
| |
|
||||||| |||||| ||||||||| ||||| || || ||| ||||||| ||||||||||||||| |
|
|
| T |
49276386 |
gattaattatgcacgttatgaagagtttgatactagaaatatggagcgagcaagagatgtgtaca |
49276322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University