View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11237_low_18 (Length: 208)
Name: NF11237_low_18
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 515756 - 515566
Alignment:
| Q |
1 |
caaccatcgcatgtgcgtccagaaatctggcacacatgtgctgccgctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
515756 |
caaccatcgcatgtgcgtccagaaatctggcacacatgtgctaccgctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtc |
515657 |
T |
|
| Q |
101 |
acttagaaaatgcttctccttcttcttcctccattactcacacacactcttttctacaaagctttcgtcctttcactccttgtattgtctc |
191 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
515656 |
acctagaaaacgcttctccttcttcttcctccattactcacacacactcttttctacaaagttttcgtcctttcactctttgtattgtctc |
515566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 560580 - 560701
Alignment:
| Q |
1 |
caaccatcgcatgtgcgtccagaaatctggcacacatgtgctgccgctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtc |
100 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||| | | |||||||||| |||| |||||||||||||| || ||||| ||||| |||||||| | |
|
|
| T |
560580 |
caaccatcgcatgtgcaccctcaaatatggcagacatgcaccggcgctgccgtccaaataccaaagttgcattccagagtttactattttccacaaggcc |
560679 |
T |
|
| Q |
101 |
acttagaaaatgcttctccttc |
122 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
560680 |
acttagaacatgcttcttcttc |
560701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 8823054 - 8823119
Alignment:
| Q |
50 |
ccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgctt |
115 |
Q |
| |
|
||||||||||||| || | ||||||| |||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
8823054 |
ccgtcaaaattcctaaacttcattcaaaggtttactatttcccgcaaggtcacttagaacatgctt |
8823119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 20229263 - 20229322
Alignment:
| Q |
63 |
aaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgcttctccttc |
122 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| |||| |
|
|
| T |
20229263 |
aaagttgcattcaagagtttactattttccacaaggccacttagaatatgcttcttcttc |
20229322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University