View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11237_low_3 (Length: 472)
Name: NF11237_low_3
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 28431218 - 28430769
Alignment:
| Q |
11 |
caaaggtaacaaaggatggacggcggaaactgtgtcaacgataccatccaaggtgcccgttgcagcctaaatagaaagaaggagacattataaatgtgtt |
110 |
Q |
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| T |
28431218 |
caaaggtaacaaaggatggacggcagaaactgtgtcaatgataccatccaaggtgcccgttgcagcctaaataaaaagaaggagacattataaatgtgtt |
28431119 |
T |
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| Q |
111 |
tggtttcaagctaataaa--taaatgtattgtcaccttcatgtaannnnnnnnn--atttcgttagtttttagagggatctagtaatcatgtaacaaccg |
206 |
Q |
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| T |
28431118 |
tggtttcaagctaataaaaataaatgtatggtcaccttcatgtaaattttttatttatttcgttagtctttagagggatctagtaatcatgtaacaaccg |
28431019 |
T |
|
| Q |
207 |
aactcgagtgattggaattaattctatcttaattgaacttgagttcaaatttcggtcgattatgaaggtccgtttctatgagaataggataattaagcct |
306 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28431018 |
aactcgagtgattggagttaattctatcttaattgaacttgagttcaaatttcggtcgattatcaaggtccgtttctatgagaataggataattaagcct |
28430919 |
T |
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| Q |
307 |
aaaaagaattcaaaaattgatcataattactctaatatagtagatacatacctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaaga |
406 |
Q |
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| T |
28430918 |
aaaaagaattgaaaaattgatcataattactctaatatagtagatacatacctgcatttgatcttgttcactgctaaccacaaatgagtcagctccaaga |
28430819 |
T |
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| Q |
407 |
agttcaatagcttccttctttttgttaggagaagtgctaatcactgttac |
456 |
Q |
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| T |
28430818 |
agttcaatagcttccttctttttgttaggagaagtgctaatcactgttac |
28430769 |
T |
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Back To:
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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 456
Target Start/End: Original strand, 13373003 - 13373103
Alignment:
| Q |
356 |
acctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtta |
455 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
13373003 |
acctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgtta |
13373102 |
T |
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| Q |
456 |
c |
456 |
Q |
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| T |
13373103 |
c |
13373103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 13378823 - 13378884
Alignment:
| Q |
380 |
ctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagt |
441 |
Q |
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| T |
13378823 |
ctaaccacgaatgagtcagctcctaagcgttcaatggcttccttctttttgttaggagaagt |
13378884 |
T |
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