View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11237_low_4 (Length: 432)
Name: NF11237_low_4
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 167 - 415
Target Start/End: Complemental strand, 40843564 - 40843316
Alignment:
| Q |
167 |
agctattggttcgcttgtatttaactatatatannnnnnnggaacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcact |
266 |
Q |
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| T |
40843564 |
agctattggttcgcttgtatttaactatatatttttttttggaacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcact |
40843465 |
T |
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| Q |
267 |
tcagatgttacaagattggatgcaagggaaactgcactcagcacaaaaccaaaatcacattcttgttgtataaatattaatggcatttccttgtaaacat |
366 |
Q |
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| T |
40843464 |
tcagatgttacaagattggatgcaagggaaactgcactcagcacaaaaccaaaatcacattcttgttgtataaacattaatggcatttccttgtaaacat |
40843365 |
T |
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| Q |
367 |
tggaatgatgaataaaactcatttgtttttccccaagtcactctcaaat |
415 |
Q |
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| T |
40843364 |
tggaatgatgaataaaactcatttgtttttccccaagtcactctcaaat |
40843316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 207 - 415
Target Start/End: Complemental strand, 40838810 - 40838594
Alignment:
| Q |
207 |
ggaacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttcagatgttacaagattggatgcaagggaaac-------- |
298 |
Q |
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| T |
40838810 |
ggaacaatagttgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttcagatgttacaagaatggatgcaagggaaactgatatga |
40838711 |
T |
|
| Q |
299 |
tgcactcagcacaaaaccaaaatcacattcttgttgtataaatattaatggcatttccttgtaaacattggaatgatgaataaaactcatttgtttttcc |
398 |
Q |
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| T |
40838710 |
tgcactcagcacaaaaccaaaatcacattcttgttgtctaaacattaatgtcatttccttgtgaacattggaataatgaataaaacacatttgtttttcc |
40838611 |
T |
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| Q |
399 |
ccaagtcactctcaaat |
415 |
Q |
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| T |
40838610 |
ctgagccactctcaaat |
40838594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 40843710 - 40843599
Alignment:
| Q |
1 |
ttctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatagtacagaaacttca |
100 |
Q |
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| T |
40843710 |
ttctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatagtacagacacttca |
40843611 |
T |
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| Q |
101 |
aattaaaagtgt |
112 |
Q |
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| T |
40843610 |
aattaaaagtgt |
40843599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 40849379 - 40849288
Alignment:
| Q |
209 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttcagatgttacaagattggatgcaagggaaactg |
300 |
Q |
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| T |
40849379 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactg |
40849288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 40839092 - 40838967
Alignment:
| Q |
1 |
ttctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatagtacagaaacttca |
100 |
Q |
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||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||| |
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| T |
40839092 |
ttctgaaaagccatggaccattggctttccgcaaggta---gtttaaggatgtattcatgagcataagcggctattcgtctacaatgtacagacacttca |
40838996 |
T |
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| Q |
101 |
aattaaaag--tgtctggttttcgacata |
127 |
Q |
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| T |
40838995 |
aattaaaagtttgtctggtgttcgacata |
40838967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 40849215 - 40849133
Alignment:
| Q |
327 |
tcttgttgtataaatattaatggcatttccttgtaaacattggaatgatgaataaaactcatttgtttttccccaagtcactc |
409 |
Q |
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|||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||| |
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| T |
40849215 |
tcttattgtatacacattaatggcatttccttgtgaacattggaaggatgaataaaatacatttctttttccccaagtcactc |
40849133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 40849649 - 40849594
Alignment:
| Q |
2 |
tctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattc |
57 |
Q |
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| T |
40849649 |
tctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattc |
40849594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 21146898 - 21146938
Alignment:
| Q |
235 |
atggttcctatggatcaaccaaaagttgcacttcagatgtt |
275 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
21146898 |
atggtccctatggatcaaccaaaagctgcacttcagatgtt |
21146938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 21151475 - 21151539
Alignment:
| Q |
211 |
caataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttcagatgtt |
275 |
Q |
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||||||||||| || ||||| || ||||| ||||||||||||||||||| |||| | |||||||| |
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| T |
21151475 |
caataggtgaatgatgctggacatatggtccctatggatcaaccaaaagctgcattacagatgtt |
21151539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 21126805 - 21126844
Alignment:
| Q |
236 |
tggttcctatggatcaaccaaaagttgcacttcagatgtt |
275 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||| |
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| T |
21126805 |
tggtccctatggatcaaccaaaagctgcacttcagatgtt |
21126844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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