View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11237_low_5 (Length: 411)
Name: NF11237_low_5
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Original strand, 893510 - 893896
Alignment:
| Q |
11 |
caaaggacaaaaagaaatcactaattgtatccatatacataagtaccatactcattgctctcaaagatgcgcatgttttctaaaactacactttttgttc |
110 |
Q |
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| T |
893510 |
caaaggacaaaaagaaatcactaattgtatccatatacataagtaccatactcattgctctcaaagatgcgcatgttttctaaaactacactttttgttc |
893609 |
T |
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| Q |
111 |
agaaaagagaagtgtaaaagttaaaatattgattttgaaaatacaacagaagaattagaagaaaaatcagagaaattaaataaacccgagacatgagatg |
210 |
Q |
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| T |
893610 |
agaaaagagaagtgtaaaagttaaaatattgattttgaaaatacaacagaagaattagaagaaaaatcagagaaattaaataaacccgagacatgagatg |
893709 |
T |
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| Q |
211 |
ggaaaaacaaagataattaaattgaaacaaatgaattaaacagtaaatcacataacatgatattacaggatttgaatcaacatatgaattcaacaatttc |
310 |
Q |
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| T |
893710 |
ggaaaaacaaagataattaaattgaaacaaatgaattaaacagtaaatcacataacatgatattacaggatttgaatcaacatatgaattcaacaatttc |
893809 |
T |
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| Q |
311 |
tgaataaatctaactaaataaagaaatatataagagagattaaaaaccgaaatgcaccgtaactgtccgtctattttaagaggaaag |
397 |
Q |
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| T |
893810 |
tgaataaatctaactaaataaagaaatatataagagagattaaaaaccgaaatgcaccgtaactgtccgtctattttaagaggaaag |
893896 |
T |
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