View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11237_low_6 (Length: 368)
Name: NF11237_low_6
Description: NF11237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11237_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 34788384 - 34788054
Alignment:
| Q |
20 |
agcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgca |
119 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788384 |
agcatcctcaatcccttccctatcaccatactgtttctcaaatgctgcaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgca |
34788285 |
T |
|
| Q |
120 |
aatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacgccacaaaaagcagctctgcttcctcatcatccgctagct |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788284 |
aatttataaatacacctcgcacgccctacctccttacacctttcctcaaactccgcaaacgccacaaaaagcagctctgcttcctcatcatccgctagct |
34788185 |
T |
|
| Q |
220 |
ccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacacaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788184 |
ccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacacaa |
34788085 |
T |
|
| Q |
320 |
aacaaatctctcgaaaatccctctcgcacgt |
350 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
34788084 |
aacaaatctctcgaaaatccctctcgcacgt |
34788054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 2292810 - 2293136
Alignment:
| Q |
20 |
agcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgca |
119 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2292810 |
agcatcctcaatcccttccctatcaccatactgtttctcaaatgccacaaacttccgatacaaatcctcagccctccccttcggaatatgatcaagtgca |
2292909 |
T |
|
| Q |
120 |
aatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacgccacaaaaagcagctctgcttcctcatcatccgctag-- |
217 |
Q |
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|
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
2292910 |
aatttataaatacacctcgcccgctcagcctccttacacctttcctcaaactccgcaaaagccacaaaaagcagctcagcttcctcatcatccgcaagct |
2293009 |
T |
|
| Q |
218 |
-ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgaca |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
2293010 |
tctccaccgctctttcataaacattcctcgccttaggaacctcgccattcttcatctcaaacttcgcataacgtatccaagcaccaaccctaggatgaca |
2293109 |
T |
|
| Q |
317 |
caaaacaaatctctcgaaaatccctct |
343 |
Q |
| |
|
||| ||||||||||||||||||||||| |
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| T |
2293110 |
caatacaaatctctcgaaaatccctct |
2293136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 2597961 - 2598110
Alignment:
| Q |
20 |
agcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||| ||||| || | |
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| T |
2597961 |
agcatcctcaatcccttccctatcaccatactgtttctcaaatgccacaaatttcccatacaaatcctcagccctccccttcggaatataatcaattgga |
2598060 |
T |
|
| Q |
120 |
aatttataaatacacctcgcacgccctgcctccttacacctttcctcaaa |
169 |
Q |
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||||||||||||||| |||||| | ||||||| |||||||||||| |||| |
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| T |
2598061 |
aatttataaatacacatcgcacactctgcctcattacacctttccacaaa |
2598110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 33635664 - 33635762
Alignment:
| Q |
218 |
ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgaca |
316 |
Q |
| |
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|||||| ||||||||||||||| | || ||| ||||||| || ||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| |
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| T |
33635664 |
ctccacagctctttcataaacacttcttgccctaggaacttcaccattcttcatctcaaatttcgcataacgtaaccaagcaccaacactaggatgaca |
33635762 |
T |
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