View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_1 (Length: 742)
Name: NF11238_high_1
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 729
Target Start/End: Original strand, 16916922 - 16917623
Alignment:
| Q |
19 |
agaatcgaaggagtagagatgctatcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttgaggaagttt |
118 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16916922 |
agaatcgaaggagtagagatgctctcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttaaggaagttt |
16917021 |
T |
|
| Q |
119 |
atgttggaggaaaaactaaagagtttaatgctcatggtgcatctttcctcctgagaaatattgcagttaagatgcctaacctcacagaacttatgattga |
218 |
Q |
| |
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||||||||||| ||||| |||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16917022 |
atgttggaggagaaactgaagagtttaatgatcatggtgcatctttcct---gagagatattgcaggtaagatgcctaacctcacagaacttatgattga |
16917118 |
T |
|
| Q |
219 |
aaactttgatcaaattaaggtactacctattgaacttagctctctcggttccctacagaaactctacatttcatgttgtcgtaatcttgagtccattcct |
318 |
Q |
| |
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| |||| ||||||| | ||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16917119 |
aggctttcatcaaatcacggtactacctaatgaactcagatctctcagttccctacagaaactctacatttcatgttgtggtaatcttgagtccattcct |
16917218 |
T |
|
| Q |
319 |
aacatgtcttcgagttctcttcaagttttgagctttgcactttgcaataggttaaaatccattattgtcgcaaa-tacattattgttgcaaactagactt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| | |||| ||| | | |||||| ||| |
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| T |
16917219 |
aacatgtcttcgagttctcttcaagttttgggctttgcactttgcaatagcttaaaatcc----ttgccccaaagtacgaca---gccctaactagtctt |
16917311 |
T |
|
| Q |
418 |
tggagacttcaaatacattattgtcgcaaactcattttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaa |
517 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
16917312 |
cagagacttcaaatacattattgtcccaaactcattttaccagctaatatgaacatgttaacttcccttcgtaaagtgactatcatgggtgcggataaaa |
16917411 |
T |
|
| Q |
518 |
ggcgcaggttatataacggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaa |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
16917412 |
ggcgcaggttatataacggcttagaacacattccctcgctggaaaatttgtctctgacagattttccttttcttagatctttgccagactggttgggaaa |
16917511 |
T |
|
| Q |
618 |
cacgcctactcttcaggaattagaaattagtaagtttcctatcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtatt |
717 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
16917512 |
cacgctatctcttcagaaattagaaattagtaagtttcctgtgttaacctcactaccagacaactttgagcaactcgaaaacttgcagaaactaagtatt |
16917611 |
T |
|
| Q |
718 |
gatagatgtcct |
729 |
Q |
| |
|
|||||||||||| |
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|
| T |
16917612 |
gatagatgtcct |
16917623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 420 - 735
Target Start/End: Original strand, 16912128 - 16912443
Alignment:
| Q |
420 |
gagacttcaaatacattattgtcgcaaactcattttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaagg |
519 |
Q |
| |
|
||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
16912128 |
gagacttataatacactattgtcccgaactcattttaccagctaatatgaacatgttaaattcccttcgtgaagtgagtatcatgggtggggatagaagg |
16912227 |
T |
|
| Q |
520 |
cgcaggttatataacggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaaca |
619 |
Q |
| |
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||| || ||||||||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16912228 |
cgcgggatatataacggcttagaagacattcccttgctgcaaaatttgtctctgagagattttccttctcttagatctttgccagactggttgggagaca |
16912327 |
T |
|
| Q |
620 |
cgcctactcttcaggaattagaaattagtaagtttcctatcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtattga |
719 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||| |
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| T |
16912328 |
cgctatctcttcaggaattagaaattagtaagtttcctaagttaacctcgttaccagacaactttgaccaactcgaaaacttgcagaaactatgtattga |
16912427 |
T |
|
| Q |
720 |
tagatgtcctatgctt |
735 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
16912428 |
tagatgtcctaggctt |
16912443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 16911727 - 16911978
Alignment:
| Q |
19 |
agaatcgaaggagtagagatgctatcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttgaggaagttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
16911727 |
agaatcgaaggagtagagatgctatcacaactttctaagttaagcattcagagtatccctcaatttgaacttccaagccttccctctgttaaggaagttt |
16911826 |
T |
|
| Q |
119 |
atgttggaggaaaaactaaagagtttaatgctcatggtgcatctttcctcctgagaaatattgcagttaagatgcctaacctcacagaacttatgattga |
218 |
Q |
| |
|
||||||||||| ||||| ||||| || || ||||| ||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
16911827 |
atgttggaggagaaactgaagaggatattgatcatgaagcatctt---tcctgagagatattgcaggtaagatgcctaacctcaaagaacttatgattga |
16911923 |
T |
|
| Q |
219 |
aaactttgatcaaattaaggtactacctattgaacttagctctctcggttcccta |
273 |
Q |
| |
|
|||| ||||| | | ||||||||||| |||||| ||||||||| |||||||| |
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|
| T |
16911924 |
cgcctttcatcaactcacggtactacctaatgaactcagctctctccgttcccta |
16911978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 16975084 - 16975207
Alignment:
| Q |
195 |
taacctcacagaacttatgattgaaaactttgatcaaattaaggtactacctattgaacttagctctctcggttccctacagaaactctacatttcatgt |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || || |||||||||||| |||||| | |||||| | ||||| | ||||| ||||| |||||| |
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| T |
16975084 |
taacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatccctggaaaaactatacatctcatgt |
16975183 |
T |
|
| Q |
295 |
tgtcgtaatcttgagtccattcct |
318 |
Q |
| |
|
| | |||| |||||||| |||||| |
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|
| T |
16975184 |
tttggtaagcttgagtctattcct |
16975207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 452 - 503
Target Start/End: Complemental strand, 16836779 - 16836728
Alignment:
| Q |
452 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcat |
503 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
16836779 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgagaatcat |
16836728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 497
Target Start/End: Complemental strand, 16841890 - 16841845
Alignment:
| Q |
452 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgag |
497 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
16841890 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgag |
16841845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 16837029 - 16836923
Alignment:
| Q |
205 |
gaacttatgattgaaaactttgatcaaattaaggtactacctattgaacttagctctctcggttccctacagaaactctacatttcatgttgtcgtaatc |
304 |
Q |
| |
|
|||||| | ||| |||| |||||| || | ||||||||||||| |||||| | ||||||| |||||||||| ||||| | ||||||| ||||| || | |
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|
| T |
16837029 |
gaacttttcattcaaaagtttgatgaactcaaggtactacctaatgaactcaactctctcagttccctacaaaaactattaatttcattttgtccaaagc |
16836930 |
T |
|
| Q |
305 |
ttgagtc |
311 |
Q |
| |
|
||||||| |
|
|
| T |
16836929 |
ttgagtc |
16836923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 16842140 - 16842070
Alignment:
| Q |
205 |
gaacttatgattgaaaactttgatcaaattaaggtactacctattgaacttagctctctcggttccctaca |
275 |
Q |
| |
|
|||||| | |||||||| |||||| || | ||||||||||||| |||||| | ||||||| |||||||||| |
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|
| T |
16842140 |
gaacttttcattgaaaattttgatgaactcaaggtactacctaatgaactcaactctctcagttccctaca |
16842070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 614
Target Start/End: Complemental strand, 13376036 - 13375982
Alignment:
| Q |
560 |
aaaatttgtctctgacagattttccttctcttagatctttgccagactggttggg |
614 |
Q |
| |
|
||||||||||||| || ||||||||||||| | ||| ||||||||||||||||| |
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|
| T |
13376036 |
aaaatttgtctctaactaattttccttctctaacatccttgccagactggttggg |
13375982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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