View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_12 (Length: 319)
Name: NF11238_high_12
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 36756940 - 36757235
Alignment:
| Q |
1 |
atggggttgaatgttacccgtactactagtgaaaagatcatcaaaataaagctcagctacaccacaaacctcaacctgttcatcaacaaattcatcatca |
100 |
Q |
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| T |
36756940 |
atggggttgaatgttacccgtactactagtgaaaagatcatcaaaataaagctcagctacaccacaaagctcaacctgttcatcaacaaattcatcatca |
36757039 |
T |
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| Q |
101 |
cttctttgcaacttcgatatatgattttgcttccttcttgcactaatcatgacatgaaaaaactttgaatttctatcatctttcttcaaccaatttatat |
200 |
Q |
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| T |
36757040 |
cttctttgcaacttcgatatatgattttgcttccttcttgcactaatcatgacatcaaaaaactttgaatttttatcatctttcttcaaccaatttatat |
36757139 |
T |
|
| Q |
201 |
ttgtttgttgtctccaaaatgcatcctccttggccaagagatagctcatgcattgtctagtgtcaatgtatcgcttaaccgcttctttatcctcct |
296 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36757140 |
ttgttcgttatctccaaaatgcatcctccttggccaagagatagctcatgcattgtctagtgtcaatgtatcgcttaaccgcttctttatcctcct |
36757235 |
T |
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