View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_14 (Length: 308)
Name: NF11238_high_14
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 7152365 - 7152280
Alignment:
| Q |
212 |
agacctggtgattctcaagtggatgccgttttgatccaatggtcgaatttgttagcttctaccaatgctttcccatattccttcat |
297 |
Q |
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| T |
7152365 |
agacctggtgattctcaagtggatgccgttttgatccaatggtcgaatttgttagcttctaccaatgctttcccagattccttcat |
7152280 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7152460 - 7152429
Alignment:
| Q |
1 |
ttttggtacgggaggaagagaactttactgat |
32 |
Q |
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| T |
7152460 |
ttttggtacgggaggaagagaactttactgat |
7152429 |
T |
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