View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11238_high_16 (Length: 286)

Name: NF11238_high_16
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11238_high_16
NF11238_high_16
[»] chr1 (10 HSPs)
chr1 (20-279)||(34491364-34491623)
chr1 (143-199)||(10758239-10758295)
chr1 (144-205)||(15964154-15964215)
chr1 (88-205)||(13876852-13876965)
chr1 (143-205)||(16127573-16127635)
chr1 (156-205)||(28012132-28012181)
chr1 (79-131)||(33725735-33725787)
chr1 (155-205)||(27118395-27118445)
chr1 (88-134)||(39393381-39393427)
chr1 (88-134)||(43579244-43579290)
[»] chr4 (13 HSPs)
chr4 (87-199)||(20097426-20097538)
chr4 (88-205)||(51204581-51204698)
chr4 (84-205)||(2266789-2266906)
chr4 (156-205)||(22729777-22729826)
chr4 (156-205)||(22756864-22756913)
chr4 (156-205)||(1012362-1012411)
chr4 (144-205)||(9743642-9743703)
chr4 (88-141)||(55241260-55241313)
chr4 (161-205)||(28293166-28293210)
chr4 (84-134)||(27396614-27396664)
chr4 (88-205)||(2704514-2704625)
chr4 (88-205)||(33036135-33036251)
chr4 (88-140)||(38812254-38812306)
[»] chr5 (14 HSPs)
chr5 (215-279)||(25653797-25653861)
chr5 (212-279)||(33752819-33752886)
chr5 (143-205)||(31878436-31878498)
chr5 (145-205)||(33163568-33163630)
chr5 (212-279)||(33848458-33848525)
chr5 (88-199)||(10237416-10237523)
chr5 (88-199)||(21320753-21320860)
chr5 (84-205)||(12081200-12081323)
chr5 (144-187)||(8777364-8777407)
chr5 (144-199)||(26411351-26411406)
chr5 (88-143)||(39572821-39572876)
chr5 (88-190)||(33848635-33848737)
chr5 (128-205)||(25653622-25653699)
chr5 (88-172)||(10053191-10053274)
[»] chr3 (13 HSPs)
chr3 (88-205)||(40640567-40640680)
chr3 (88-205)||(53811909-53812022)
chr3 (144-205)||(45879431-45879492)
chr3 (144-205)||(49359561-49359622)
chr3 (88-199)||(42204344-42204455)
chr3 (77-205)||(44880783-44880906)
chr3 (88-205)||(18272157-18272269)
chr3 (110-195)||(43485331-43485416)
chr3 (79-134)||(21193590-21193645)
chr3 (88-134)||(4015453-4015499)
chr3 (88-198)||(42665477-42665587)
chr3 (144-205)||(5124726-5124787)
chr3 (155-187)||(13006968-13007000)
[»] chr2 (15 HSPs)
chr2 (90-199)||(18947537-18947642)
chr2 (85-205)||(41643871-41643987)
chr2 (143-205)||(19073411-19073473)
chr2 (88-197)||(22963402-22963511)
chr2 (88-197)||(22997966-22998075)
chr2 (83-199)||(6177772-6177884)
chr2 (143-205)||(15650901-15650963)
chr2 (143-205)||(18779334-18779396)
chr2 (144-205)||(58080-58141)
chr2 (88-196)||(43446400-43446508)
chr2 (86-205)||(30844844-30844962)
chr2 (85-143)||(3176938-3176996)
chr2 (88-175)||(39788540-39788623)
chr2 (84-141)||(36641984-36642041)
chr2 (83-123)||(31570900-31570940)
[»] chr7 (9 HSPs)
chr7 (94-205)||(22955245-22955352)
chr7 (88-199)||(23402310-23402417)
chr7 (145-205)||(4618688-4618748)
chr7 (142-199)||(5781570-5781625)
chr7 (155-205)||(37854227-37854277)
chr7 (142-199)||(8133498-8133555)
chr7 (156-205)||(49002292-49002341)
chr7 (88-134)||(5657619-5657665)
chr7 (142-198)||(4902392-4902448)
[»] chr6 (4 HSPs)
chr6 (82-205)||(19631745-19631864)
chr6 (145-199)||(4102865-4102919)
chr6 (88-134)||(24662190-24662236)
chr6 (86-134)||(30353494-30353542)
[»] scaffold0200 (1 HSPs)
scaffold0200 (88-199)||(24756-24863)
[»] chr8 (2 HSPs)
chr8 (88-134)||(5300089-5300135)
chr8 (88-141)||(33197893-33197946)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 34491623 - 34491364
Alignment:
Q  20 aatggcactataatgagggttacttaatgcatttcatacataactcacatctaacacataaaacaagaaaaattctatggtaaagtgatgagaataactt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||    
T  34491623 aatggcactataatgagggttacttaatgcatttcatacataactcacatctaacatataaaacaagaaaagttctatggtgaagtgatgagaataattt 34491524  T
Q  120 ttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacatcaaactatcgtaaa 219  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||| |||||    
T  34491523 ttctgatgaagttaattctatgatcaatcattaaacatttgtgtatttaatccatgccacatcagattataagatgtattccacgtcaaactattgtaaa 34491424  T
Q  220 acttatgcattaaaattgttcatattcatcagttcctttcatctatgagcttttcatctc 279  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34491423 acttatgcatcaaaattgttcatattcatcagttcctttcatctatgagcttttcatctc 34491364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 10758295 - 10758239
Alignment:
Q  143 tcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtatt 199  Q
    ||||||||| | |||||||||||||||| |||||||||||| |||||||||||||||    
T  10758295 tcaatcattgagcatttgtgtatttaattcatgccacatcagattatatggtgtatt 10758239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 15964154 - 15964215
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||||| ||||||||||||||||| ||| ||| ||||||||||| ||||||| |||||    
T  15964154 caatcattaagcatttgtgtatttaatctatgtcacgtcaaattatatagtgtattgcacat 15964215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 13876965 - 13876852
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||||||| |||| |||| ||| |||||| |  |||||||||    || |||||||||| |  |||||||||||||||| ||||||| ||| ||     
T  13876965 aaaattctatggtgaagttatgaaaatgacttttatggtgaagttaa----atgatcaatcattgagtatttgtgtatttaatcaatgccacgtcatatc 13876870  T
Q  188 atatggtgtattccacat 205  Q
    |||||||||||| |||||    
T  13876869 atatggtgtattacacat 13876852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 16127573 - 16127635
Alignment:
Q  143 tcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||| | ||||||||||||||||||||| ||| ||| |||||||| |||||| |||||    
T  16127573 tcaatcattgatcatttgtgtatttaatccatgacacgtcagattatatgatgtattgcacat 16127635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 28012132 - 28012181
Alignment:
Q  156 atttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||| |||||    
T  28012132 atttgtgtatttaatgcatgtcacattaaattatatggtgtattgcacat 28012181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 33725787 - 33725735
Alignment:
Q  79 aaaacaagaaaaattctatggtaaagtgatgagaataacttttctaatgaagt 131  Q
    |||||| |||||||||||||||||||| | |||||| ||||||||| ||||||    
T  33725787 aaaacatgaaaaattctatggtaaagtcaagagaatgacttttctagtgaagt 33725735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 27118395 - 27118445
Alignment:
Q  155 catttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||| ||||||||||||||||||| ||| |||||||| |||||| |||||    
T  27118395 catttatgtatttaatccatgccacgtcatattatatgatgtattgcacat 27118445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 39393381 - 39393427
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    ||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  39393381 aaaattctacggtgaagttatgagaatgacttttctaatgaagttaa 39393427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 43579244 - 43579290
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    ||||||||||||| |||| |||||||| ||||||||| |||||||||    
T  43579244 aaaattctatggtgaagtcatgagaatgacttttctagtgaagttaa 43579290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 20097538 - 20097426
Alignment:
Q  87 aaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaat 186  Q
    |||||||||||||| |||| |||||||| ||||||||  |||||||||  |||| ||||||||||   |||||||||||||||| |||||||| ||| ||    
T  20097538 aaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaattcatgccacgtcagat 20097439  T
Q  187 tatatggtgtatt 199  Q
    ||||| |||||||    
T  20097438 tatatagtgtatt 20097426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 51204581 - 51204698
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||||||| |||| || | ||| ||||||||  |||||||||  |||| |||||| ||| | | ||||||||||||||||||| ||||||| |||    
T  51204581 aaaattctatggtgaagtcataaaaatgacttttctggtgaagttaaccctatgatcaattattgagcttttgtgtatttaatccatgtcacatcagatt 51204680  T
Q  188 atatggtgtattccacat 205  Q
    |||||||| ||| |||||    
T  51204681 atatggtgcattgcacat 51204698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 2266906 - 2266789
Alignment:
Q  84 aagaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatca 183  Q
    |||||||||| |||||| |||| |||| ||| ||||||||| ||||||||| ||     ||||||||| | ||||||||||||||||||||||||| | |    
T  2266906 aagaaaaattatatggtgaagtcatgataatgacttttctagtgaagttaaatcg----tcaatcattgagcatttgtgtatttaatccatgccacgtta 2266811  T
Q  184 aattatatggtgtattccacat 205  Q
     |||| |||||||||| |||||    
T  2266810 gattacatggtgtattacacat 2266789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 22729777 - 22729826
Alignment:
Q  156 atttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  22729777 atttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacat 22729826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 22756913 - 22756864
Alignment:
Q  156 atttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  22756913 atttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacat 22756864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 1012362 - 1012411
Alignment:
Q  156 atttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||| |||||    
T  1012362 atttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacat 1012411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 9743642 - 9743703
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||| ||| |||||||||||||||||||||||  || ||| ||||||||||||||| |||||    
T  9743642 caattattgaacatttgtgtatttaatccatgtaacgtcatattatatggtgtattgcacat 9743703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 55241313 - 55241260
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctata 141  Q
    ||||||||||||| |||| |||||||| ||||||||| |||||||||| |||||    
T  55241313 aaaattctatggtgaagtcatgagaatgacttttctagtgaagttaatactata 55241260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 28293210 - 28293166
Alignment:
Q  161 tgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||    
T  28293210 tgtatttaatccatgctacatcaaattatatgatgtattgcacat 28293166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 27396614 - 27396664
Alignment:
Q  84 aagaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    ||||||||||||||||| |||| |||||||| ||||||||  |||||||||    
T  27396614 aagaaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 27396664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 2704514 - 2704625
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||| |||||| |||| |||| ||| ||||||||  |||||||||    || |||||||||| || ||||||||||||||| || | ||| ||  |||    
T  2704514 aaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaa----atgatcaatcattgaatatttgtgtatttaattcacgtcacgtc--att 2704607  T
Q  188 atatggtgtattccacat 205  Q
    |||||||||||| |||||    
T  2704608 atatggtgtattgcacat 2704625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 33036251 - 33036135
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||||||||||||||| || | ||| ||||||||| | | ||||| | ||| |||||||||| | || || |||||||||||||||  || | | |||    
T  33036251 aaaattctatggtaaagtcatcacaattacttttctatttatgttaactttatgatcaatcattgagca-ttctgtatttaatccatgttacgttagatt 33036153  T
Q  188 atatggtgtattccacat 205  Q
    |||| ||||||| |||||    
T  33036152 atattgtgtattgcacat 33036135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 38812306 - 38812254
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctat 140  Q
    ||||||||||||| |||| |||||||| ||||||||  |||||||||| ||||    
T  38812306 aaaattctatggtgaagtcatgagaatgacttttctggtgaagttaatcctat 38812254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 25653797 - 25653861
Alignment:
Q  215 gtaaaacttatgcattaaaattgttcatattcatcagttcctttcatctatgagcttttcatctc 279  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||    
T  25653797 gtaaaacgtatgcatcaaaattgttcatcttcatcagttcctttcatctctgagcttttcatctc 25653861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 33752886 - 33752819
Alignment:
Q  212 atcgtaaaacttatgcattaaaattgttcatattcatcagttcctttcatctatgagcttttcatctc 279  Q
    |||||||||| ||||||| ||||| |||||| | ||||||||||||| | ||||||||||||||||||    
T  33752886 atcgtaaaacgtatgcatcaaaatagttcatctacatcagttccttttacctatgagcttttcatctc 33752819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 31878436 - 31878498
Alignment:
Q  143 tcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||||| |||||||||||||||| |||| ||| ||| ||||||||||||||| |||||    
T  31878436 tcaatcattaagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacat 31878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 33163568 - 33163630
Alignment:
Q  145 aatcattaaacatttgtgtatttaatccatgccacatcaaat--tatatggtgtattccacat 205  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||||    
T  33163568 aatcattaaacatttgtgtgtttaatctatgccacatcagattatatatggtgtattgcacat 33163630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 33848525 - 33848458
Alignment:
Q  212 atcgtaaaacttatgcattaaaattgttcatattcatcagttcctttcatctatgagcttttcatctc 279  Q
    |||||||||| ||||||| ||||| |||||| |||||| |||| ||| | ||||||||||||||||||    
T  33848525 atcgtaaaacgtatgcatcaaaatagttcatcttcatcggttcgttttacctatgagcttttcatctc 33848458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 10237416 - 10237523
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||||||| || |||| |||| ||| ||||||||| |||||||||    ||  ||||||||| | |||||||||||||||| |||  ||| ||| |||    
T  10237416 aaaattctattgtgaagtcatgaaaatgacttttctagtgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatttcacgtcagatt 10237511  T
Q  188 atatggtgtatt 199  Q
    ||||||||||||    
T  10237512 atatggtgtatt 10237523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 21320753 - 21320860
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||||||| |||| || | ||| |||||| | ||||||||||    || |||||||||| | |||| ||||||||||   ||||||||||| |||    
T  21320753 aaaattctatggtgaagtaataaaaatgacttttttgatgaagttaa----atgatcaatcattgagcattcgtgtatttaactaatgccacatcagatt 21320848  T
Q  188 atatggtgtatt 199  Q
    ||||||||||||    
T  21320849 atatggtgtatt 21320860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 12081323 - 12081200
Alignment:
Q  84 aagaaaaattctatggtaaagtgatgagaataacttttctaatg--aagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacat 181  Q
    |||||||||| |||||| |||| |||||||| |||||| |  ||  |||||||  |||| ||||||||||  ||||| |||||| ||||||||| | |||    
T  12081323 aagaaaaattatatggtgaagttatgagaatgactttttttttgctaagttaaccctatgatcaatcattggacatt-gtgtatataatccatgacgcat 12081225  T
Q  182 caa-attatatggtgtattccacat 205  Q
    ||| ||||||||||||||| |||||    
T  12081224 caagattatatggtgtattacacat 12081200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 8777407 - 8777364
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||    
T  8777407 caatcataatacatttgtgtatttaatgcatgccacatcaaatt 8777364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 26411351 - 26411406
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtatt 199  Q
    |||||||| || |||| |||||||||| |||| ||| |||||||||||||||||||    
T  26411351 caatcattgaatatttatgtatttaatacatgtcacgtcaaattatatggtgtatt 26411406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 39572821 - 39572876
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataat 143  Q
    ||||||||||||| |||| |||||||| ||||||||| | |||||||| |||||||    
T  39572821 aaaattctatggtgaagtcatgagaatgacttttctagttaagttaatactataat 39572876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 33848737 - 33848635
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||||||| || || | |||||||| | ||||||  |||| ||||  |||||| |||||||| | ||||||||||||||||| ||| ||| ||| |||    
T  33848737 aaaattctatagtgaaataatgagaatcatttttctggtgaaattaaccctataaccaatcatttagcatttgtgtatttaatcaatgtcacttcagatt 33848638  T
Q  188 ata 190  Q
    |||    
T  33848637 ata 33848635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 25653622 - 25653699
Alignment:
Q  128 aagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||| ||||| |||||||||| |  ||||||||||||||| |||  ||| ||| ||| ||||||||||| |||||    
T  25653622 aagttaactctatgatcaatcattgagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacat 25653699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 10053191 - 10053274
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatcc 172  Q
    ||||||||| ||| ||  ||||||||||| ||||||  |||||| |||||||| || ||| ||| | ||||||||||||||||||    
T  10053191 aaaattctacggtgaaacgatgagaataatttttctggtgaagtcaattctatgattaat-attgagcatttgtgtatttaatcc 10053274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 40640680 - 40640567
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||||||| |||| |||||||| ||||||||  |||||||||    ||  ||||||||| | ||||||||||||||||||||| ||| ||| |||    
T  40640680 aaaattctatggtgaagtcatgagaatgacttttctggtgaagttaa----atggtcaatcattgagcatttgtgtatttaatccatgtcacgtcatatt 40640585  T
Q  188 atatggtgtattccacat 205  Q
    |||||||||||| |||||    
T  40640584 atatggtgtattgcacat 40640567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 53812022 - 53811909
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||| ||| |||| |||||||| |||||||| ||||||||||| ||||  ||| | |    |||||| ||||||||||||||| ||| ||| |||    
T  53812022 aaaattctacggtgaagtcatgagaatgacttttctgatgaagttaatgctatggtcagtga----acatttatgtatttaatccatgtcacgtcagatt 53811927  T
Q  188 atatggtgtattccacat 205  Q
    ||||||||||||||||||    
T  53811926 atatggtgtattccacat 53811909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 45879492 - 45879431
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||| |||||    
T  45879492 caatcattgagcatttgtgtatttaatccatgccacgtcagattatatggtgtattgcacat 45879431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 49359622 - 49359561
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||| ||||||||||||||||||||||| ||| ||| |||||||| |||||| |||||    
T  49359622 caatcattgaacatttgtgtatttaatccatgacacgtcatattatatgatgtattgcacat 49359561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 42204344 - 42204455
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||||||| || ||||  ||||||| |||||||| ||||||||||   ||| | | || ||| | ||||||||||||||||| ||| ||||||  |||    
T  42204344 aaaattctatcgtgaagtcgtgagaatgacttttctgatgaagttaaccatatgacctattattgagcatttgtgtatttaatctatgtcacatcggatt 42204443  T
Q  188 atatggtgtatt 199  Q
    ||||||||||||    
T  42204444 atatggtgtatt 42204455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 44880783 - 44880906
Alignment:
Q  77 ataaaacaagaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgc 176  Q
    |||||| |||||||||| || ||| || | |||| ||| |||||| ||||||||||||    ||  ||||||||| ||||||| |||||||||||||||     
T  44880783 ataaaaaaagaaaaattttacggtgaaattatgaaaatgactttt-taatgaagttaa----atggtcaatcattgaacatttatgtatttaatccatgt 44880877  T
Q  177 cacatcaaattatatggtgtattccacat 205  Q
    ||| ||| || |||||||||||| |||||    
T  44880878 cacgtcagataatatggtgtattgcacat 44880906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 18272269 - 18272157
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||| || ||| |||| |||||||| ||||||||||||| ||||| ||      |||||||| |||||||||||||||||| |||  ||  ||| |||    
T  18272269 aaaattatacggtgaagtcatgagaatgacttttctaatgacgttaactcc-----caatcattgaacatttgtgtatttaattcatatcaagtcagatt 18272175  T
Q  188 atatggtgtattccacat 205  Q
    |||||||||||| |||||    
T  18272174 atatggtgtattgcacat 18272157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 43485331 - 43485416
Alignment:
Q  110 agaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtg 195  Q
    ||||| ||||||||  |||||||||| |||| | |||||||| |||||||   |||||||| |||||||| ||| |||||||||||    
T  43485331 agaatgacttttctggtgaagttaatcctatgaccaatcattgaacattttcatatttaattcatgccacttcagattatatggtg 43485416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 21193590 - 21193645
Alignment:
Q  79 aaaacaagaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    |||| ||| |||||||||||||||||| |||||||| ||||||||  |||||||||    
T  21193590 aaaataaggaaaattctatggtaaagtcatgagaatgacttttctggtgaagttaa 21193645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 4015453 - 4015499
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    ||||||||||||| |||| |||||||| |||||||| ||||||||||    
T  4015453 aaaattctatggtgaagtcatgagaatgacttttctgatgaagttaa 4015499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 42665587 - 42665477
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||||||| |||| |||| ||| | |||| |  ||||||||||  | ||| |||||||| || |||||| |||||||| |||| ||| |||||||    
T  42665587 aaaattctatggtgaagttatgataatgatttttttggtgaagttaatattttaaccaatcattgaagatttgtatatttaatgcatgacacgtcaaatt 42665488  T
Q  188 atatggtgtat 198  Q
    ||  |||||||    
T  42665487 atggggtgtat 42665477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 5124726 - 5124787
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||| ||||||||||||||||||  ||| ||  |||||||||| |||||||| |||||    
T  5124726 caatcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacggtgtattgcacat 5124787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 13006968 - 13007000
Alignment:
Q  155 catttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||||||||||||| ||||||||||||||||    
T  13006968 catttgtgtatttaatgcatgccacatcaaatt 13007000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 18947642 - 18947537
Alignment:
Q  90 aattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaattat 189  Q
    ||||||||||| |||| |||| ||||||||||||  |||||||||    ||  ||||||||| ||||||||||||||||||||||| ||| ||| |||||    
T  18947642 aattctatggtgaagtcatgaaaataacttttctggtgaagttaa----atggtcaatcattgaacatttgtgtatttaatccatgtcacgtcagattat 18947547  T
Q  190 atggtgtatt 199  Q
    ||||||||||    
T  18947546 atggtgtatt 18947537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 41643871 - 41643987
Alignment:
Q  85 agaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaa 184  Q
    |||||||||||||||| |||| |||| ||| |||||| |  |||||||||    ||  ||||||||| | |||||||||||||||| |||| ||| |||     
T  41643871 agaaaaattctatggtgaagtcatgataatgacttttttggtgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcag 41643966  T
Q  185 attatatggtgtattccacat 205  Q
    ||||||||||||||| |||||    
T  41643967 attatatggtgtattgcacat 41643987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 19073411 - 19073473
Alignment:
Q  143 tcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||| |  |||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  19073411 tcaatcattgagaatttgtgtatttaatccatgtcacgtcagattatatggtgtattccacat 19073473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 22963402 - 22963511
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||| |||||| |||| || ||||| ||||||||  | |||||||| |||| | |||||||| | | ||||||||||||||| |||| || ||| |||    
T  22963402 aaaattttatggtgaagtcataagaatgacttttctggtaaagttaatcctatgaccaatcatttagcttttgtgtatttaatcaatgcaacgtcagatt 22963501  T
Q  188 atatggtgta 197  Q
    ||||||||||    
T  22963502 atatggtgta 22963511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 22998075 - 22997966
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||| |||||| |||| || ||||| ||||||||  | |||||||| |||| | |||||||| | | ||||||||||||||| |||| || ||| |||    
T  22998075 aaaattttatggtgaagtcataagaatgacttttctggtaaagttaatcctatgaccaatcatttagcttttgtgtatttaatcaatgcaacgtcagatt 22997976  T
Q  188 atatggtgta 197  Q
    ||||||||||    
T  22997975 atatggtgta 22997966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 6177772 - 6177884
Alignment:
Q  83 caagaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatc 182  Q
    |||| ||||||||| ||  |||| |||||||| ||||||||  |||||||||    ||  ||||||||| | |||||||||||||||| |||| ||| ||    
T  6177772 caaggaaaattctacggcgaagtcatgagaatgacttttctggtgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtc 6177867  T
Q  183 aaattatatggtgtatt 199  Q
    | |||||||||||||||    
T  6177868 agattatatggtgtatt 6177884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 15650901 - 15650963
Alignment:
Q  143 tcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||||||| |||||||||||||||||||  ||| | | ||||||||||||||| |||||    
T  15650901 tcaatcattaaatatttgtgtatttaatccatatcacgtaagattatatggtgtatttcacat 15650963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 18779396 - 18779334
Alignment:
Q  143 tcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||| | |||||||||||||||| |||| ||||||| |||||||||| |||| |||||    
T  18779396 tcaatcattgagcatttgtgtatttaattcatgtcacatcagattatatggtttattgcacat 18779334  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 58080 - 58141
Alignment:
Q  144 caatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    |||||||| ||||| | |||||||||| |||| || |||||||||||||||||||| |||||    
T  58080 caatcatttaacatatctgtatttaattcatgtcagatcaaattatatggtgtattgcacat 58141  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 43446508 - 43446400
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||||||| |||| |||||||| ||||||    ||||||||     || |||||||||| |||||||| |||| |||| ||| |||| |||||||    
T  43446508 aaaattctatggtgaagtcatgagaatgactttttcggtgaagttatgagaatgatcaatcattgaacatttgcgtatctaatgcataccacgtcaaatt 43446409  T
Q  188 atatggtgt 196  Q
    |||||||||    
T  43446408 atatggtgt 43446400  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 30844844 - 30844962
Alignment:
Q  86 gaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaa 185  Q
    ||||| ||||||||| |||| |||||||| ||||||    |||||||||| | || |||||||||| | ||||  ||||||||||||||| ||| ||| |    
T  30844844 gaaaagttctatggtgaagttatgagaatgacttttaaggtgaagttaatcccatgatcaatcattgagcattc-tgtatttaatccatgtcacgtcaga 30844942  T
Q  186 ttatatggtgtattccacat 205  Q
    ||||||| | |||| |||||    
T  30844943 ttatatgatatattgcacat 30844962  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 3176938 - 3176996
Alignment:
Q  85 agaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataat 143  Q
    |||||||||||||||| |||| | || ||| |||||||| ||||||||||| |||||||    
T  3176938 agaaaaattctatggtgaagttacgaaaatgacttttctgatgaagttaatactataat 3176996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 39788623 - 39788540
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatg 175  Q
    |||||| |||||| |||| || ||||| ||||||||| |||||| ||    ||| ||||||||| | |||||||||||||||||||||    
T  39788623 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa----atagtcaatcattgagcatttgtgtatttaatccatg 39788540  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 36641984 - 36642041
Alignment:
Q  84 aagaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctata 141  Q
    ||||||||||||||||| |||| |||||||| ||||||||  |||| ||||| |||||    
T  36641984 aagaaaaattctatggtgaagtcatgagaatgacttttctggtgaaattaatactata 36642041  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 31570940 - 31570900
Alignment:
Q  83 caagaaaaattctatggtaaagtgatgagaataacttttct 123  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  31570940 caaggaaaattctatggtgaagttatgagaataacttttct 31570900  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 22955352 - 22955245
Alignment:
Q  94 ctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatgg 193  Q
    ||||||| |||| |||||||| ||||||||  |||||||||    ||  ||||| ||| ||||||||||||||||||||||| ||| |||||||||||||    
T  22955352 ctatggtgaagtaatgagaatgacttttctggtgaagttaa----atggtcaattattgaacatttgtgtatttaatccatgtcacgtcaaattatatgg 22955257  T
Q  194 tgtattccacat 205  Q
    |||||| |||||    
T  22955256 tgtattgcacat 22955245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 23402417 - 23402310
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    ||||||||||||  |||| |||||||| ||||||||  |||||||||    ||  ||||||||| ||||| |||||||||||| |||| ||| ||| |||    
T  23402417 aaaattctatggcgaagtcatgagaatgacttttctggtgaagttaa----atggtcaatcattgaacatctgtgtatttaattcatgtcacgtcatatt 23402322  T
Q  188 atatggtgtatt 199  Q
    ||||||||||||    
T  23402321 atatggtgtatt 23402310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 4618748 - 4618688
Alignment:
Q  145 aatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||| |||||||||||||||||| |||| | | ||||||||||||||||||| |||||    
T  4618748 aatcattgaacatttgtgtatttaattcatgtcgcttcaaattatatggtgtattgcacat 4618688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 5781570 - 5781625
Alignment:
Q  142 atcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtatt 199  Q
    ||||||||||||| |||||||||||||||||||| ||| ||  |||||||||||||||    
T  5781570 atcaatcattaaatatttgtgtatttaatccatgtcacgtc--attatatggtgtatt 5781625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 37854277 - 37854227
Alignment:
Q  155 catttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| |||||    
T  37854277 catttgtgtatttaatccatgtcacgtcacattatatggtgtattgcacat 37854227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 8133555 - 8133498
Alignment:
Q  142 atcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtatt 199  Q
    |||||||||||| |||||||||||||||| || | ||| ||| |||||||||||||||    
T  8133555 atcaatcattaagcatttgtgtatttaattcaagacacgtcagattatatggtgtatt 8133498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 49002292 - 49002341
Alignment:
Q  156 atttgtgtatttaatccatgccacatcaaattatatggtgtattccacat 205  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||| |||||    
T  49002292 atttgtgtatttaatccataccatatcagattatatggtgtattgcacat 49002341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 5657665 - 5657619
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    ||||||||||||| |||| |||||||| ||||||||| |||||||||    
T  5657665 aaaattctatggtgaagtcatgagaatgacttttctagtgaagttaa 5657619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 4902392 - 4902448
Alignment:
Q  142 atcaatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtat 198  Q
    |||||| ||| | ||||| ||||||||||||||| ||| ||| ||||||||||||||    
T  4902392 atcaattattgagcatttatgtatttaatccatgtcacgtcagattatatggtgtat 4902448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 19631745 - 19631864
Alignment:
Q  82 acaagaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacat 181  Q
    ||||| ||||||||||||| |||| || ||||| ||||||||  |||||||||    || | |||||||| ||||||||||||||||||||||| ||| |    
T  19631745 acaaggaaaattctatggtgaagtcataagaatgacttttctggtgaagttaa----atgaccaatcattgaacatttgtgtatttaatccatgtcacgt 19631840  T
Q  182 caaattatatggtgtattccacat 205  Q
     | ||||||||||||||| |||||    
T  19631841 tagattatatggtgtattgcacat 19631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 4102919 - 4102865
Alignment:
Q  145 aatcattaaacatttgtgtatttaatccatgccacatcaaattatatggtgtatt 199  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  4102919 aatcattgaacatttgtgtatttaatctatgccacatcatattatatggtgtatt 4102865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 24662236 - 24662190
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    |||||||||||||||||| |||| ||| ||||||||| |||||||||    
T  24662236 aaaattctatggtaaagtcatgataatgacttttctagtgaagttaa 24662190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 30353542 - 30353494
Alignment:
Q  86 gaaaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    ||||||||||||||| |||| |||||||| ||||||||  |||||||||    
T  30353542 gaaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 30353494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 24863 - 24756
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctataatcaatcattaaacatttgtgtatttaatccatgccacatcaaatt 187  Q
    |||||||||||| ||||| |||||||| | ||||||  |||| ||||    ||  ||||||||| | |||||||||||||||| |||| ||| ||| |||    
T  24863 aaaattctatggcaaagttatgagaatgatttttctggtgaaattaa----atggtcaatcattgagcatttgtgtatttaattcatgtcacgtcagatt 24768  T
Q  188 atatggtgtatt 199  Q
    ||||||||||||    
T  24767 atatggtgtatt 24756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 5300135 - 5300089
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaa 134  Q
    ||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  5300135 aaaattctatggtgaagtcatgagaatgacttttttaatgaagttaa 5300089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 33197893 - 33197946
Alignment:
Q  88 aaaattctatggtaaagtgatgagaataacttttctaatgaagttaattctata 141  Q
    ||||||||||||| |||| |||||||||| |||||| || |||||||| |||||    
T  33197893 aaaattctatggtgaagtcatgagaataatttttctgattaagttaatactata 33197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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