View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_18 (Length: 250)
Name: NF11238_high_18
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12747232 - 12746993
Alignment:
| Q |
1 |
ttaattttggaatttatgtagtgatgagatattccaagttctaacaatgttgtgcatggttagatacaggtcaatctctagcttctatcaatatgacaaa |
100 |
Q |
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| T |
12747232 |
ttaattttgaaatttatgtagtgatgagatattccaagttccaacaatgttgtgcatggttagatacaggtcaatctctagcttctattaatatgacaaa |
12747133 |
T |
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| Q |
101 |
cattgatctcatccctaaaggcatttctcggactacgatgaaagattgtaagccgatagctttatgtaatgttctctataaattgatctctaaggttctt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12747132 |
cattgatctcatccctaaaggcaattctcggactacgatggaagattgtaagccgatagctttatgtaatgttctctataaattgatctctaaggttctc |
12747033 |
T |
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| Q |
201 |
gcaaataagttgaagcttattctcccacagtgaatctctg |
240 |
Q |
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| T |
12747032 |
gcaaataagttgaagcttattctcccacagtgaatctctg |
12746993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12810316 - 12810077
Alignment:
| Q |
1 |
ttaattttggaatttatgtagtgatgagatattccaagttctaacaatgttgtgcatggttagatacaggtcaatctctagcttctatcaatatgacaaa |
100 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12810316 |
ttaattttgaaatttatatagtgatgagatattccaagttccaacaatgttgtgcatggttagatacaggtcaatctctagcttctattaatatgacaaa |
12810217 |
T |
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| Q |
101 |
cattgatctcatccctaaaggcatttctcggactacgatgaaagattgtaagccgatagctttatgtaatgttctctataaattgatctctaaggttctt |
200 |
Q |
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| T |
12810216 |
cattgatctcatccctaaaggcaattctcggactacgatggaagattgtaagccgatagctttatgtaatgttctctataaattgatctctaaggttctc |
12810117 |
T |
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| Q |
201 |
gcaaataagttgaagcttattctcccacagtgaatctctg |
240 |
Q |
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| T |
12810116 |
gcaaataagttgaagcttattctcccacagtgaatctctg |
12810077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 21977481 - 21977284
Alignment:
| Q |
43 |
aacaatgttgtgcatggttagatacaggtcaatctctagcttctatcaatatgacaaacattgatctcatccctaaaggcatttctcggactacgatgaa |
142 |
Q |
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||||||||||||||||||| |||||| ||||| || ||||||| | ||| |||||||||||| ||||||||| ||||| | ||||| ||||| ||||| |
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| T |
21977481 |
aacaatgttgtgcatggttcgatacatgtcaacttccagcttctcttaatctgacaaacattgctctcatcccaaaaggtaattctcatactacaatgaa |
21977382 |
T |
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| Q |
143 |
agattgtaagccgatagctttatgtaatgttctctataaattgatctctaaggttcttgcaaataagttgaagcttattctcccacagtgaatctctg |
240 |
Q |
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|||||| | | ||||| |||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
21977381 |
agattgacggtcaatagccctatgtaatgttctctacaaatggatctctaaggttctcgcaaatagattgaagcttattcacccacagtgtatctctg |
21977284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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