View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_19 (Length: 244)
Name: NF11238_high_19
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 1516970 - 1517180
Alignment:
| Q |
18 |
acttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggcttataatattaatgatattttgctatattc |
117 |
Q |
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| T |
1516970 |
acttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggcttataatattaatgatattttgctatattc |
1517069 |
T |
|
| Q |
118 |
ccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaa |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1517070 |
ccagttaaaaaaaataggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaa |
1517169 |
T |
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| Q |
218 |
gtgaacttcat |
228 |
Q |
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||||||||||| |
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|
| T |
1517170 |
gtgaacttcat |
1517180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 2908305 - 2908515
Alignment:
| Q |
18 |
acttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggcttataatattaatgatattttgctatattc |
117 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||| || |||| ||||||||| |
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| T |
2908305 |
acttgctgcatcaccattccaaggcttggcatgttgaagtgatttgaggtatgcttcctaccactatggtttataatattattggcatttcgctatattc |
2908404 |
T |
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| Q |
118 |
ccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaa |
217 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||| |||||||||||| |
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| T |
2908405 |
ccagttaaagcaaataggattacttggtatcctgagattgtgacctcttattcgatgaagtcggcatataggctagttatcgctcattttgtggacacaa |
2908504 |
T |
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| Q |
218 |
gtgaacttcat |
228 |
Q |
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||||||||||| |
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| T |
2908505 |
gtgaacttcat |
2908515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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