View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11238_high_2 (Length: 701)

Name: NF11238_high_2
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11238_high_2
NF11238_high_2
[»] chr6 (32 HSPs)
chr6 (17-690)||(21189115-21189788)
chr6 (346-609)||(21205253-21205512)
chr6 (77-211)||(21155688-21155823)
chr6 (230-307)||(21174879-21174956)
chr6 (230-310)||(21212954-21213034)
chr6 (77-172)||(21140787-21140882)
chr6 (81-214)||(21148052-21148189)
chr6 (245-309)||(21244281-21244345)
chr6 (230-310)||(21274573-21274653)
chr6 (234-310)||(21296003-21296079)
chr6 (77-163)||(21296237-21296322)
chr6 (230-310)||(21155503-21155581)
chr6 (476-557)||(21203504-21203585)
chr6 (77-122)||(21280767-21280812)
chr6 (230-290)||(21305835-21305893)
chr6 (126-214)||(21355288-21355377)
chr6 (124-214)||(21205893-21205984)
chr6 (97-214)||(21305990-21306107)
chr6 (230-279)||(21205740-21205789)
chr6 (230-287)||(21233875-21233932)
chr6 (118-198)||(21244080-21244161)
chr6 (565-609)||(21155434-21155478)
chr6 (77-144)||(21250389-21250456)
chr6 (162-214)||(21151451-21151504)
chr6 (131-214)||(21175056-21175140)
chr6 (139-214)||(21213130-21213206)
chr6 (232-279)||(21140589-21140636)
chr6 (501-552)||(21217184-21217235)
chr6 (620-666)||(21155328-21155374)
chr6 (264-306)||(21355147-21355189)
chr6 (501-566)||(21221634-21221699)
chr6 (159-214)||(21274757-21274813)
[»] scaffold0060 (3 HSPs)
scaffold0060 (77-211)||(22740-22875)
scaffold0060 (230-310)||(23131-23211)
scaffold0060 (77-105)||(16812-16840)
[»] scaffold1787 (2 HSPs)
scaffold1787 (230-310)||(1138-1218)
scaffold1787 (77-166)||(877-966)
[»] scaffold0016 (2 HSPs)
scaffold0016 (241-310)||(36207-36274)
scaffold0016 (241-306)||(55755-55820)
[»] chr5 (1 HSPs)
chr5 (529-598)||(21645884-21645951)


Alignment Details
Target: chr6 (Bit Score: 601; Significance: 0; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 17 - 690
Target Start/End: Complemental strand, 21189788 - 21189115
Alignment:
Q  17 catttgcaactatcttgcttacaggtttcaaccaccaaattgtttgtacttctaaaatatttgttctcttatggccatgtcttcatttttattcaaaatt 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21189788 catttgcaactatcttgcatacaggtttcaaccaccaaattgtttgtacttctaaaatatttgttctcttatggccatgtcttcatttttattcaaaatt 21189689  T
Q  117 ttgcaccatttcattctatgcacttcatccaaatccaagaacataatattcttaactgatttattttggtctgttttattaatcagtatgataatgataa 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21189688 ttgcaccatttcattctatgcacttcatcgaaatccaagaacataatattcttaactggtttattttggtctgttttattaatcagtatgataatgataa 21189589  T
Q  217 tgattgatgaaaatgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaacttttaactga 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21189588 tgattgatgaaaatgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatctaccaacttttaactga 21189489  T
Q  317 aacaacccttttattacagttccagtttaactcggttgcagtataataccaatcaagatacaaaaattagagtgtacaatattgtaccatttccctctct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21189488 aacaacccttttattacagttccagtttaactcggttgcagtataataccaatcaagatacaaaaattagagtgtacaatattgtaccatttccctctct 21189389  T
Q  417 aaatttgtgacttttcggtgaaattacagtgtcaattgttttcactagagnnnnnnncttctcagtttctctttttcgtttcataaaatttaacaagttc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||| ||||||||||||||||||||||    
T  21189388 aaatttgtgacttttcggtgaaattacagtgtcaattgttttcactagagtttttttcttctccgtttctctttttcatttcataaaatttaacaagttc 21189289  T
Q  517 aaagttctaatgaatagaatatagcaattatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaagaagtaacaccttgtagcaaa 616  Q
    |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  21189288 aaagttctaaagaatagaatataacaattagcagcatcaagacatataaataaaacaactagaaacatgagcaaatgaagaagtaacaccttgtagcaaa 21189189  T
Q  617 ggaataaaacacccttctatacatgtgagctaagtatattgttccaacccaatgttttagattatgatgtccat 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  21189188 ggaataaaacacccttctatacatgtgagctaagtatattgttccaacccaatgttttagattttgctgtccat 21189115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 346 - 609
Target Start/End: Complemental strand, 21205512 - 21205253
Alignment:
Q  346 actcggttgcagtataataccaatcaagatacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgaaattacag 445  Q
    ||||||||||||| ||||||||||||||| ||||||||    |||||||||   |||||||||||||||||||||||||||||||||||||||||||| |    
T  21205512 actcggttgcagtttaataccaatcaagacacaaaaatc---gtgtacaat---gtaccatttccctctctaaatttgtgacttttcggtgaaattacgg 21205419  T
Q  446 tgtcaattgttttcact--agagnnnnnnncttctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaa 543  Q
    |||||||||||||||||  ||||        |||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||| ||    
T  21205418 tgtcaattgttttcactccagagttatttttttctcagtttctctttctcttttcacaaaatttaacaagttcaaagttctaaagaatagaatatagaaa 21205319  T
Q  544 ttatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaagaagtaacaccttg 609  Q
    || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  21205318 ttgtcagcatcaagacatataaataaaacaaccagaaacatgagcaaaggaagaagtaaaaccttg 21205253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 21155823 - 21155688
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttttattcaaaattttgcaccatttcattctatgcacttcatccaaatccaagaacataatattcttaact-ga 175  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |||| |||||||  ||| |||||| ||| ||||| ||||| |     
T  21155823 ttgttctcttatggcgatgccttcatttttattcaaaattgtgcaccatttcattccatgcgcttcatcggaattcaagaatatagtattcgtaactggt 21155724  T
Q  176 tttattttggtctgttttattaatcagtatgataat 211  Q
    ||||||| | ||| |||| | |||||||||||||||    
T  21155723 tttatttggatcttttttctaaatcagtatgataat 21155688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 21174956 - 21174879
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaact 307  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||    
T  21174956 tgcaatatcgaaagatacatgtaaataagtttgattgtgtaattttaggactatagaagagtgcttgatctaccaact 21174879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 21213034 - 21212954
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt 310  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||| |||||||||||    
T  21213034 tgcaatatcgaaagatgcatgtaaataagtttgattgtgtgattttatgactatagaagagtgcttgatctaccaactttt 21212954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 21140882 - 21140787
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttttattcaaaattttgcaccatttcattctatgcacttcatccaaatccaagaacataatattcttaac 172  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| |||| ||  ||| |||||| ||||||||| ||||    
T  21140882 ttgttctcttatgaccatgtcttcatttttattcaaaactatgcaccatttcattctatgcgcttcttcggaattcaagaaaataatattcctaac 21140787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 21148189 - 21148052
Alignment:
Q  81 tctcttatggccatgtcttcatttttattcaaaattttgcaccatttcattctatgcacttcatccaaatccaagaacataatat---tcttaactgatt 177  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||| |||||||  ||| |||||| |||||||   | |||| || ||    
T  21148189 tctcttatggccatgtcttcatttttattcaaaattgggcaccatttcattttatgcgcttcatcggaattcaagaaaataatatttattttaaatggtt 21148090  T
Q  178 t-attttggtctgttttattaatcagtatgataatgat 214  Q
    | |||||| ||| ||||  |||||||||||||||||||    
T  21148089 tgattttgctcttttttcgtaatcagtatgataatgat 21148052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 21244281 - 21244345
Alignment:
Q  245 tacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaacttt 309  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||||    
T  21244281 tacatgtaaattagtttgattgtgtgattttaggactacagaagagtgtttgatctaccaacttt 21244345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 21274653 - 21274573
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt 310  Q
    |||||||||| || |||||||||||||||||||||||| |||||||| || |||| | ||||| ||||| |||||||||||    
T  21274653 tgcaatatcgaaatatacatgtaaataagtttgattgtttgattttaagactatatatgagtgcttgatctaccaactttt 21274573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 21296079 - 21296003
Alignment:
Q  234 atatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt 310  Q
    |||||| ||||  |||||||||||||||| |||||||||||||||| |||| ||||||| ||||| |||||||||||    
T  21296079 atatcgaaagacgcatgtaaataagtttggttgtgtgattttaggactataaaagagtgcttgatctaccaactttt 21296003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 21296322 - 21296237
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttttattcaaaattttgcaccatttcattctatgcacttcatccaaatccaagaacataat 163  Q
    ||||||||| |||| ||| |||||||||||||||| |||| |||||||||||||| |||||||||||||  ||| |||||| |||||    
T  21296322 ttgttctct-atggtcatctcttcatttttattcagaattgtgcaccatttcattgtatgcacttcatcagaattcaagaatataat 21296237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 21155581 - 21155503
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt 310  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |||||||   ||||||| || ||||| |||||||||||    
T  21155581 tgcaatatcgaaagatacatgtaaataagtttgattgtatgaatttagga--ctagaagaatgcttgatctaccaactttt 21155503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 476 - 557
Target Start/End: Complemental strand, 21203585 - 21203504
Alignment:
Q  476 tctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaag 557  Q
    ||||||||| ||||| || ||||| |||||| ||||||||||||||| |||  ||||||||||||||||| |||||| ||||    
T  21203585 tctcagtttttctttctcttttcacaaaattgaacaagttcaaagttgtaaataatagaatatagcaattctcagcaccaag 21203504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 21280812 - 21280767
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttttattcaaaattttgcac 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  21280812 ttgttctcttatggccatgtcttcatttttattcaaaattgtgcac 21280767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 21305893 - 21305835
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagag 290  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||    
T  21305893 tgcaatatcggaagatacatataaataagtt--attgtgtgattttaggactatagaagag 21305835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 21355377 - 21355288
Alignment:
Q  126 ttcattctatgcacttcatccaaatccaagaacataatattcttaactgattt-attttggtctgttttattaatcagtatgataatgat 214  Q
    ||||||| |||| |||||||  ||| |||||| ||||||||| |||||| ||| |||||||||| |||| ||||||||||||||||||||    
T  21355377 ttcattccatgcgcttcatcggaattcaagaatataatattcgtaactggttttattttggtcttttttcttaatcagtatgataatgat 21355288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 21205984 - 21205893
Alignment:
Q  124 atttcattctatgcacttcatccaaatccaagaacataatattcttaactgattt-attttggtctgttttattaatcagtatgataatgat 214  Q
    |||||| |||||||| ||||||  ||| |||||| || ||||||||||||| ||| |||||||||| |||| || |||||||||||||||||    
T  21205984 atttcaatctatgcatttcatcggaattcaagaaaatcatattcttaactggttttattttggtcttttttcttgatcagtatgataatgat 21205893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 21306107 - 21305990
Alignment:
Q  97 cttcatttttattcaaaattttgcaccatttcattctatgcacttcatccaaatccaagaacataatattcttaactgatt-tattttggtctgttttat 195  Q
    ||||||||||| |||||||| |||||||||||||||||||  |||||||  ||| ||||||  ||||||| |||| || || |||||| |||| |||| |    
T  21306107 cttcatttttaatcaaaattgtgcaccatttcattctatgtgcttcatcggaattcaagaaactaatatt-ttaagtggttctattttcgtcttttttct 21306009  T
Q  196 taatcagtatgataatgat 214  Q
    ||||| |||||| ||||||    
T  21306008 taatctgtatgagaatgat 21305990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 21205789 - 21205740
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttagga 279  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  21205789 tgcaatatcgaaagatgcaagtaaataagtttgattgtgtgattttagga 21205740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 21233932 - 21233875
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaa 287  Q
    |||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||    
T  21233932 tgcaatatcgaaaggtacatataaataagtttgattgtgtcattttaggactatagaa 21233875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 21244080 - 21244161
Alignment:
Q  118 tgcaccatttcattctatgcacttcatccaaatccaagaacataatattcttaact-gatttattttggtctgttttattaa 198  Q
    |||||||||||||| ||||| ||||||| |||| || ||| ||||||||||||||| | ||||||||||||| |||| ||||    
T  21244080 tgcaccatttcattatatgcgcttcatcaaaattcaggaatataatattcttaactggttttattttggtcttttttcttaa 21244161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 609
Target Start/End: Complemental strand, 21155478 - 21155434
Alignment:
Q  565 aataaaacagctagaaacatgagcaaaggaagaagtaacaccttg 609  Q
    ||||||||| | |||||||||||||||||||||||||||||||||    
T  21155478 aataaaacaaccagaaacatgagcaaaggaagaagtaacaccttg 21155434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 21250389 - 21250456
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttttattcaaaattttgcaccatttcattctatgcacttcat 144  Q
    ||||| |||| ||||||||||||| ||||||||||||| | |||||||||||||| || || ||||||    
T  21250389 ttgttatcttttggccatgtcttcgtttttattcaaaactgtgcaccatttcattttacgcgcttcat 21250456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 21151504 - 21151451
Alignment:
Q  162 atattcttaactgattt-attttggtctgttttattaatcagtatgataatgat 214  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||    
T  21151504 atattcttaactgattttattttggtcttttttcttaatcagtatgagaatgat 21151451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 21175140 - 21175056
Alignment:
Q  131 tctatgcacttcatccaaatccaagaacataatattcttaact-gatttattttggtctgttttattaatcagtatgataatgat 214  Q
    ||||||| ||||||| |||| |||||| ||||||||||||||| | |||||||| |||  |||| | ||||| ||||||||||||    
T  21175140 tctatgcgcttcatcaaaattcaagaaaataatattcttaactggttttatttttgtcctttttctgaatcaatatgataatgat 21175056  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 21213206 - 21213130
Alignment:
Q  139 cttcatccaaatccaagaacataatattcttaact-gatttattttggtctgttttattaatcagtatgataatgat 214  Q
    ||||||| |||| ||||||||||||||| |||||| | ||||||||  ||| |||| ||||||||||||| ||||||    
T  21213206 cttcatcgaaattcaagaacataatatttttaactggttttatttttctcttttttcttaatcagtatgagaatgat 21213130  T

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Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 21140636 - 21140589
Alignment:
Q  232 caatatcggaagatacatgtaaataagtttgattgtgtgattttagga 279  Q
    |||||||  ||| ||||||||||||||||||||| |||||||||||||    
T  21140636 caatatcaaaaggtacatgtaaataagtttgattatgtgattttagga 21140589  T

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Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 21217235 - 21217184
Alignment:
Q  501 aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagca 552  Q
    |||||||||||||||||||||||||| |||||| |||||  |||| ||||||    
T  21217235 aaaatttaacaagttcaaagttctaaagaatagcatatacaaattttcagca 21217184  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 666
Target Start/End: Complemental strand, 21155374 - 21155328
Alignment:
Q  620 ataaaacacccttctatacatgtgagctaagtatattgttccaaccc 666  Q
    |||||||| |||||||||||||||| | |||||||| ||||||||||    
T  21155374 ataaaacaaccttctatacatgtgaacgaagtatatggttccaaccc 21155328  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 21355189 - 21355147
Alignment:
Q  264 ttgtgtgattttaggaatatagaagagtgtttgatttaccaac 306  Q
    ||||| |||||||||| |||||||||||| |||||||||||||    
T  21355189 ttgtgagattttaggactatagaagagtgcttgatttaccaac 21355147  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 566
Target Start/End: Complemental strand, 21221699 - 21221634
Alignment:
Q  501 aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaa 566  Q
    |||||| ||||||||||||||| ||| |||||| |||||  |||| |||| ||||||| |||||||    
T  21221699 aaaattgaacaagttcaaagttgtaaagaatagcatatacaaattctcagtatcaagatatataaa 21221634  T

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Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 21274813 - 21274757
Alignment:
Q  159 ataatattcttaactgattt-attttggtctgttttattaatcagtatgataatgat 214  Q
    |||||||||||||||| ||| |  ||||||| |||| ||||||||||||||||||||    
T  21274813 ataatattcttaactggttttaaattggtcttttttcttaatcagtatgataatgat 21274757  T

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Target: scaffold0060 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 22740 - 22875
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttttattcaaaattttgcaccatttcattctatgcacttcatccaaatccaagaacataatattcttaact-ga 175  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |||||||  ||| |||||| ||||||||||||||| |     
T  22740 ttgttctcttatggccatgtcttcatttttattcaaaattgtgcatcattttattttatgcgcttcatcggaattcaagaaaataatattcttaactggt 22839  T
Q  176 tttattttggtctgttttattaatcagtatgataat 211  Q
    |||||||| |||| |||| |||||||||||||||||    
T  22840 tttatttttgtcttttttcttaatcagtatgataat 22875  T

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Target: scaffold0060; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 23131 - 23211
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt 310  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| |||||||||||    
T  23131 tgcaatatcaaaagatacatgtaaataagtttgattgtgtgattttaagactatagaagaatgcttgatctaccaactttt 23211  T

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Target: scaffold0060; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 16812 - 16840
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttt 105  Q
    |||||||||||||||||||||||||||||    
T  16812 ttgttctcttatggccatgtcttcatttt 16840  T

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Target: scaffold1787 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 1138 - 1218
Alignment:
Q  230 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt 310  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||    
T  1138 tgcaatatgggaagatacatgtaaataagtttgattgtgtggttttaggactatagaagagtatttgatctaccaactttt 1218  T

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Target: scaffold1787; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 877 - 966
Alignment:
Q  77 ttgttctcttatggccatgtcttcatttttattcaaaattttgcaccatttcattctatgcacttcatccaaatccaagaacataatatt 166  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| || || |||||||  ||| |||||| ||| ||||    
T  877 ttgttctcttatggccatgtcttcatttatatttaaaattttgcaccatttgattttaagcgcttcatcggaattcaagaaaatagtatt 966  T

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Target: scaffold0016 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 36207 - 36274
Alignment:
Q  241 aagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt 310  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||  |||||||| ||||||||||||||    
T  36207 aagatacatgtaaataagtttgattatgtgattttaggattatag--gagtgtttaatttaccaactttt 36274  T

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Target: scaffold0016; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 55755 - 55820
Alignment:
Q  241 aagatacatgtaaataagtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaac 306  Q
    |||||||| ||||||||||||||| |||||||| ||||| || |||| || ||||||| |||||||    
T  55755 aagatacaagtaaataagtttgatcgtgtgattataggattacagaaaagcgtttgatctaccaac 55820  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 598
Target Start/End: Original strand, 21645884 - 21645951
Alignment:
Q  529 aatagaatatagcaattatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaagaa 598  Q
    |||||||||||||||||||||||| ||||  | ||||||| |||| || |||||||||||||||||||||    
T  21645884 aatagaatatagcaattatcagcaccaag--agataaatagaacaacttgaaacatgagcaaaggaagaa 21645951  T

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