View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_22 (Length: 242)
Name: NF11238_high_22
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4872200 - 4872423
Alignment:
| Q |
1 |
atacttggttaatcttcttctcttgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcttcgtcccag |
100 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4872200 |
atacttggttaatcctcatctcttgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcatcgtcccag |
4872299 |
T |
|
| Q |
101 |
ttcttccaatatgtatgatcttttctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggtttt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4872300 |
ttcttccgatatgtatgatcttttctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggtttt |
4872399 |
T |
|
| Q |
201 |
cggttgagctgtaaacttatcatc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4872400 |
cggttgagctgtaaacttatcatc |
4872423 |
T |
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